View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_high_9 (Length: 365)
Name: NF12182_high_9
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 3111059 - 3111248
Alignment:
| Q |
17 |
gtggcaagatatggtggagcaaaagttttatgaagagcagactggtcaaaagaggaagtatccatcttccgaagaacaattcgatctaattgattccaag |
116 |
Q |
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| T |
3111059 |
gtggcaagatatggtggagcaaaagttttatgaggagcagactggtcaaaagaggaagtatccatcttccgaagaacaattcgatctaattgattccaag |
3111158 |
T |
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| Q |
117 |
gagtatgtggagaaattgccaggggaggatgttgttggtggaagtagcagtggaagcagtatcaaggaagcaataataattgacttatca |
206 |
Q |
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| T |
3111159 |
gagtatgtggagaaattgccaggggaggatgttgttggtggtagtagtagtggaagcagtatcaaggaagcaataataattgacttatca |
3111248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 233 - 347
Target Start/End: Original strand, 3111275 - 3111389
Alignment:
| Q |
233 |
ggttattgcacccttattacccaaactctgttttctgtgattgttctcatttatttaatgaacttgatgtcctccaaattttatgcattttggtagagta |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3111275 |
ggttattgcacccttattacccaaactctgttttctgtgattgttctcatttatttaatgaacttgatgtcctccaaattttatgcattttggtagagta |
3111374 |
T |
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| Q |
333 |
gctgcattatgatct |
347 |
Q |
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| T |
3111375 |
gctgcattatgatct |
3111389 |
T |
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