View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_13 (Length: 343)
Name: NF12182_low_13
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 52644889 - 52644563
Alignment:
| Q |
1 |
ccaaataaaaacatactgatactcacaatcctagtatcccaatcaaaactctttagctagacattcaatatataccttaattacagacatcaaaccggtc |
100 |
Q |
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| T |
52644889 |
ccaaataaaaacatactgatactcacaatcctagtatcccaatcaaaactctttagctagacattcaatatataccttaatgacagacatcaaaccggtc |
52644790 |
T |
|
| Q |
101 |
ttgaattgtaaaacacctcggccttcactattggggtccagattttgtgataacgaataggcatgctcacatactgcaaaaagtaagaaatatttagaac |
200 |
Q |
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| T |
52644789 |
ttgaattgtaaaacacctcggccttcactattggggtccagattttgtgataacgaataggcatgctcacatactgcaaaaagtaagaaatatttagaac |
52644690 |
T |
|
| Q |
201 |
aaagaatgggcatctggaaca--ctagaggatttcagtggtgaaattgaaggggttttcgtcaaaaggactcgtacagacttcagcatttaacatttt-c |
297 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
52644689 |
gaagaatgggcatctggaacactctagaggatttcagtggtgaaattgaaggggttttcgtcaaaaggactcgtgcagacttcagcatttaacattttcc |
52644590 |
T |
|
| Q |
298 |
ctataatccacagtaccatcacaggag |
324 |
Q |
| |
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| T |
52644589 |
ctataatccacagtaccaccacaggag |
52644563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 34166577 - 34166503
Alignment:
| Q |
73 |
taccttaattacagacatcaaaccggtcttgaattgtaaaacacctcggccttcactattggggtccagattttg |
147 |
Q |
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||||||||| |||||||| ||||||||||||||||| | ||| |||| || ||||| ||||| || |||||||| |
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| T |
34166577 |
taccttaataacagacattaaaccggtcttgaattgaagaactcctctaccatcacttttgggatcaagattttg |
34166503 |
T |
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