View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12182_low_15 (Length: 340)

Name: NF12182_low_15
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12182_low_15
NF12182_low_15
[»] chr1 (7 HSPs)
chr1 (1-96)||(4203226-4203321)
chr1 (141-239)||(7277270-7277368)
chr1 (280-325)||(4203377-4203422)
chr1 (139-182)||(4203322-4203365)
chr1 (160-219)||(24361088-24361147)
chr1 (204-239)||(7277196-7277231)
chr1 (204-233)||(4203351-4203380)
[»] chr3 (5 HSPs)
chr3 (144-219)||(421507-421582)
chr3 (160-216)||(404511-404567)
chr3 (173-220)||(6455955-6456004)
chr3 (173-220)||(6760843-6760892)
chr3 (234-271)||(6456004-6456041)
[»] chr6 (1 HSPs)
chr6 (160-219)||(24181015-24181074)
[»] chr7 (1 HSPs)
chr7 (267-326)||(39675835-39675893)


Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 4203226 - 4203321
Alignment:
Q  1 agggtatcggtttctgtttattaataacagtttggtagtatacacacagaagataattatatatccggaaaacgacaacctcgtacattaaatatt 96  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4203226 agggtatcggtttctgtttattaataacggtttggtagtatacacacagaagataattatatatccggaaaacgacaacctcgtacattaaatatt 4203321  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 7277368 - 7277270
Alignment:
Q  141 tagaatcggtcatcgcgcctcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagccatttagaatcaattagccac 239  Q
    |||||||||||||||||| |||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||    
T  7277368 tagaatcggtcatcgcgcttcaggttatcttcctttcgcagcttattttccacccaccgtttctcttccttccgcagccatttagaatcaatcagccac 7277270  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 4203377 - 4203422
Alignment:
Q  280 aattggaaatccccttcttcctctacaccctcatcttctccttctt 325  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  4203377 aattggaaatccccttcttcctctacaccctcatcttttccttctt 4203422  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 4203322 - 4203365
Alignment:
Q  139 tttagaatcggtcatcgcgcctcagtttatcttccttccgcagc 182  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  4203322 tttagaatcggtcatcgcgcttcagtttatcttccttccgcagc 4203365  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 219
Target Start/End: Complemental strand, 24361147 - 24361088
Alignment:
Q  160 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 219  Q
    ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  24361147 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 24361088  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 7277231 - 7277196
Alignment:
Q  204 tcttccttccgcagccatttagaatcaattagccac 239  Q
    ||||||||||||||||||||||||||||| ||||||    
T  7277231 tcttccttccgcagccatttagaatcaatcagccac 7277196  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 233
Target Start/End: Original strand, 4203351 - 4203380
Alignment:
Q  204 tcttccttccgcagccatttagaatcaatt 233  Q
    ||||||||||||||||||||||||||||||    
T  4203351 tcttccttccgcagccatttagaatcaatt 4203380  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 421582 - 421507
Alignment:
Q  144 aatcggtcatcgcgcctcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 219  Q
    |||| |||||||| | ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  421582 aatcagtcatcgcacttcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 421507  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 216
Target Start/End: Original strand, 404511 - 404567
Alignment:
Q  160 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgca 216  Q
    ||||||| |||| | |||||||||||||||||| ||| | |||||||||||||||||    
T  404511 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgca 404567  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 6455955 - 6456004
Alignment:
Q  173 cttccgcagcttattttcca--cccatcatttctcttccttccgcagcca 220  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  6455955 cttccgcagcttattttccaaacccaccatttctcttccttccgctgcca 6456004  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 6760892 - 6760843
Alignment:
Q  173 cttccgcagcttattttcca--cccatcatttctcttccttccgcagcca 220  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||    
T  6760892 cttccgcagcttattttccaaacccaccatttctcttccttccgctgcca 6760843  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 6456004 - 6456041
Alignment:
Q  234 agccaccgtgccggaactatagctccatattcgtgttc 271  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  6456004 agccaccgtgccggaattatagctccatatttgtgttc 6456041  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 24181015 - 24181074
Alignment:
Q  160 tcagtttatcttccttccgcagcttattttccacccatcatttctcttccttccgcagcc 219  Q
    ||||||| |||| | |||||||||||||||||| ||| | ||||||||||||||||||||    
T  24181015 tcagtttctctttcctccgcagcttattttccagccaccgtttctcttccttccgcagcc 24181074  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 39675835 - 39675893
Alignment:
Q  267 tgttcattcttaaaattgg-aaatccccttcttcctctacaccctcatcttctccttcttc 326  Q
    |||||| |||||||||||| ||||||||||||||||| |||  | ||||||||||||||||    
T  39675835 tgttcactcttaaaattggaaaatccccttcttcctcgaca--cacatcttctccttcttc 39675893  T

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