View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_16 (Length: 334)
Name: NF12182_low_16
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 318
Target Start/End: Original strand, 33230535 - 33230838
Alignment:
| Q |
15 |
tgtgctcttgattgttgtttaaaagcggatgattgagattgatttgttgaatttcccttgcgagtggttacatattgcactaattgtgttaatttgcatg |
114 |
Q |
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| T |
33230535 |
tgtgctcttgattgttgtttaaaagcggatgattgagattgatttgttgaatttcccttgcgagtggttacatattgcactaattgtgttaatttgcatg |
33230634 |
T |
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| Q |
115 |
attttgcgtttttggtgtttgaggagcgcaagccatccatgtttgttggtaaaatatttttgtgtatgtcatctttatgcttgatctcgcttgactgtcc |
214 |
Q |
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| T |
33230635 |
attttgcgtttttggtgtttgaggagcgcaagccatccatgtttgttggtaaaatatttttgtgtatgtcatctttatgcttgatctcgcttgactgtcc |
33230734 |
T |
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| Q |
215 |
ttgatctgcgatcgcacagtgaaagcatgcagtgagcttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggcagaagggtgttga |
314 |
Q |
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| T |
33230735 |
ttgatctgcgatcgcacagtgaaagcatgcagtgagcttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggcagaagggtgttga |
33230834 |
T |
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| Q |
315 |
tcag |
318 |
Q |
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|||| |
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| T |
33230835 |
tcag |
33230838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 33222643 - 33222710
Alignment:
| Q |
251 |
cttccaattcccacttctacaaacttgttcaaacatgtaaaataatgcggcagaagggtgttgatcag |
318 |
Q |
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|||||| ||||| |||||| | |||||||||||||| ||||| ||||| | ||||||||||||||||| |
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| T |
33222643 |
cttccagttcccgcttctatagacttgttcaaacatataaaacaatgctgaagaagggtgttgatcag |
33222710 |
T |
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