View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_18 (Length: 296)
Name: NF12182_low_18
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_18 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 60 - 280
Target Start/End: Complemental strand, 26702649 - 26702429
Alignment:
| Q |
60 |
tacatcaatcacaagtattgatttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctttaatcccatctctcttc |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26702649 |
tacatcaatcacaagtattgatttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctttaatctcatctctcttc |
26702550 |
T |
|
| Q |
160 |
cccttcaaaacaaaacctaaccaaagaagcatcaaatgtttgatgtttaattttaccgaactattttttgcaattcaactaaggtttcgtcctgacctga |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26702549 |
cccttcaaaacaaaacctaaccaaagaagcatcaaatgtttgatgtttaattttaccgaactattttttgcaattcaactaaggtttcttcctgacctga |
26702450 |
T |
|
| Q |
260 |
accattaacggtcctaattac |
280 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26702449 |
accattaacggtcctaattac |
26702429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 26702726 - 26702678
Alignment:
| Q |
12 |
ctgtgttggatggaggagggtttgaataaattttccaaatccaaattat |
60 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26702726 |
ctgtattggatggaggagggtttgaataaattttccaaatccaaattat |
26702678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 20513429 - 20513512
Alignment:
| Q |
59 |
atacatcaatcacaagtattgatttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctt |
142 |
Q |
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| T |
20513429 |
atacattaatcataagtatttatttatcattctctacaaaaccattctctcaaaacttttgaaagatttctctattttttcctt |
20513512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 33922664 - 33922588
Alignment:
| Q |
80 |
atttatcattcactacaaaaacattttctc-aaaacatttgaaagatttatcta--ttttttcctttaatcccatctctct |
157 |
Q |
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||||||||||| ||||||||||| ||| |||||||||||||||||| |||| ||||||||||||||| |||| |||| |
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| T |
33922664 |
atttatcattctctacaaaaaca----ctcaaaaacatttgaaagatttctctattttttttcctttaatctcatccctct |
33922588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 9595695 - 9595775
Alignment:
| Q |
72 |
aagtattgatttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctttaatcccatc |
152 |
Q |
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||||||| ||||||||||| |||||||| | |||||||||| ||||||||||||| |||||||||| || ||||| |||| |
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| T |
9595695 |
aagtattaatttatcattctctacaaaacgactttctcaaaaaatttgaaagatttctctatttttttctctaatctcatc |
9595775 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 23079895 - 23079982
Alignment:
| Q |
59 |
atacatcaatcacaagtattgatttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctttaat |
146 |
Q |
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|||||| ||||| ||||||| ||||||||||| ||| |||| || | |||||||| |||||||| |||| ||||||||||||| |||| |
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| T |
23079895 |
atacattaatcataagtatttatttatcattctctataaaatcactctctcaaaaaatttgaaatatttttctattttttcctctaat |
23079982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 147
Target Start/End: Complemental strand, 74639 - 74572
Alignment:
| Q |
80 |
atttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctattttttcctttaatc |
147 |
Q |
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||||||||||||||||||||||||||||||||| ||| ||| |||| ||| ||||||||| ||||| |
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| T |
74639 |
atttatcattcactacaaaaacattttctcaaatttttttaaatatttctctcttttttcctctaatc |
74572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 1176422 - 1176480
Alignment:
| Q |
80 |
atttatcattcactacaaaaacattttctcaaaacatttgaaagatttatctatttttt |
138 |
Q |
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||||||||||| ||||||||| ||| |||||||| | ||||| ||||| |||||||||| |
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| T |
1176422 |
atttatcattctctacaaaaaaattctctcaaaaaagttgaatgatttctctatttttt |
1176480 |
T |
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