View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_2 (Length: 615)
Name: NF12182_low_2
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 46 - 602
Target Start/End: Complemental strand, 43995254 - 43994703
Alignment:
| Q |
46 |
cgctatctatctctctactagtactgtttagtgttagctctttctctctctgttaagatatacagaagaaaacaaaacaaaacgcagtgaagaagaaaac |
145 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
43995254 |
cgctatctatctctctactagtactgtttagtgttagatctttctctctctgttcagatatacag-----aataaaacaaaacgcagtgaagaagaaaac |
43995160 |
T |
|
| Q |
146 |
gtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttcttgaccaggtatcaactcttcttcttttt |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43995159 |
gtacacacgtcacactcagatctctccttctttaatactacaacaacactttcacttccattaatggcttcttgaccaggtatcaactcttcttcttttt |
43995060 |
T |
|
| Q |
246 |
catttctttgctcaatttcactttaactcatgttcttgtttatttgtgtagattctttaatttccgttccaatctagggtttagtttttgctaaatatcc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43995059 |
catttctttgctcaatttcactttaactcatgttcttgtttatttgtttagattctttaatttccgttccaatctagggtttagtttctgctaaatatcc |
43994960 |
T |
|
| Q |
346 |
tagattcaaagatttagtaattttatagcttatatattaatcagttctgatttggagttatacggttttgctagtttattgagaatcgattttgatttca |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43994959 |
tagattcaaagatttagtaattttatagcttatatattaatcagttctgatttggatttatacggttttgctagtttattgagaatcgattttgatttca |
43994860 |
T |
|
| Q |
446 |
attcagtgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggttggattgcttcaccacctatcatccattcagat |
545 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43994859 |
attcagtgacatctctagtaacgattgtttggacaagtaagtggatcatatgaagtgttcatttggtttgattgcttcaccacctatcatccattcagat |
43994760 |
T |
|
| Q |
546 |
gttcaatttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt |
602 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43994759 |
gttcaatttttccaagcttcttctaataaccaaatttccctcagagtcacacaggtt |
43994703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 26688443 - 26688481
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaattc |
449 |
Q |
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|||||||||||||||||||||||||||| |||| ||||| |
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| T |
26688443 |
ttttgctagtttattgagaatcgattttaatttaaattc |
26688481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 26958174 - 26958212
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaattc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
26958174 |
ttttgctagtttattgagaatcgattttaatttaaattc |
26958212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 30478587 - 30478625
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaattc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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| T |
30478587 |
ttttgctagtttattgagaatcgattttaatttgaattc |
30478625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 48013662 - 48013624
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaattc |
449 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
48013662 |
ttttgctagtttattgagaatcgattttaatttgaattc |
48013624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Original strand, 19521619 - 19521657
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaattc |
449 |
Q |
| |
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|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
19521619 |
ttttgctagtttattgagaatcgattttaatttgaattc |
19521657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 45811001 - 45811038
Alignment:
| Q |
411 |
ttttgctagtttattgagaatcgattttgatttcaatt |
448 |
Q |
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|||||||||||||||||||||||||||| |||| |||| |
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| T |
45811001 |
ttttgctagtttattgagaatcgattttaatttgaatt |
45811038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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