View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12182_low_22 (Length: 269)

Name: NF12182_low_22
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12182_low_22
NF12182_low_22
[»] chr5 (5 HSPs)
chr5 (19-256)||(15601452-15601689)
chr5 (19-256)||(7185863-7186100)
chr5 (19-256)||(7239941-7240178)
chr5 (19-256)||(7245117-7245354)
chr5 (19-256)||(7198489-7198726)
[»] chr6 (1 HSPs)
chr6 (19-227)||(29261791-29261999)
[»] chr8 (3 HSPs)
chr8 (19-255)||(33379572-33379808)
chr8 (21-239)||(33399305-33399523)
chr8 (19-255)||(33386548-33386784)
[»] chr1 (2 HSPs)
chr1 (31-255)||(30636612-30636836)
chr1 (195-255)||(36447135-36447195)
[»] chr3 (1 HSPs)
chr3 (19-214)||(9815125-9815320)
[»] chr4 (1 HSPs)
chr4 (21-140)||(24032433-24032552)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 15601452 - 15601689
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15601452 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 15601551  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15601552 tccatatctcaacgtaccaggttgaggttttataggatcatcattagggtcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 15601651  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtct 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  15601652 ccagcatagcctacagagcaagttgctagttgttgtct 15601689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 7185863 - 7186100
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7185863 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttaaatgtgatccacactttaccttgaattacagaagc 7185962  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7185963 tccatatctcaacgtaccaggttgaggttttataggatcatcatttgggtcaataactttataatggttgagacccttaccaatgttttttgtcatcttt 7186062  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtct 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7186063 ccagcatagcctacagagcaagttgctagttgttgtct 7186100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 7240178 - 7239941
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240178 catcaattgttgtgaaactgctgatgagaagggacttgatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 7240079  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  7240078 tccatatctcaacgtaccaggttgaggatttataggatcatcatttgggtcagtaactttatattggatgatacccttaccaatgttgtttgtcatcttt 7239979  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtct 256  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7239978 ccagcatagcctaccgagcaagtcgctagttgttgtct 7239941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 7245354 - 7245117
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7245354 catcaattgttgtgaaactgctgatgagaagggacttgatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 7245255  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||    
T  7245254 tccatatctcaacgtaccaggttgaggatttataggatcatcatttgggtcagtaactttatattggatgatacccttaccaatgttgtttgtcatcttt 7245155  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtct 256  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  7245154 ccagcatagcctaccgagcaagtcgctagttgttgtct 7245117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 7198489 - 7198726
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7198489 catcaatggttgtgaaactgctaatgagaaggggcttcatgagtttaatgtccatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 7198588  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    ||||||||||||||||||| |||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  7198589 tccatatctcaacgtaccacgttgcggatttataggatcatcatttgggttagtaactttataatgggtgagacccttaccgatgttatttgtcatcttt 7198688  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtct 256  Q
    || ||||| |||| |||||||||  ||| |||||||||    
T  7198689 cctgcataacctatagagcaagtcactaattgttgtct 7198726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 29261999 - 29261791
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29261999 catcaatggttgtgaaactgctaatgagaaggggcttcatgagtttaatgttcatgtcttttttgaatgtgatccatactttaccttgaattacagaagc 29261900  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    |||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  29261899 tccatatctcaacgtatcagattgaggatttataggatcgtcatttgggtcagtaactttataatggatgaaacccttaccaatgttgtttgtcatcttt 29261800  T
Q  219 ccagcatag 227  Q
    |||||||||    
T  29261799 ccagcatag 29261791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 33379808 - 33379572
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||| |||||||| |||||||||||||| || |  || ||||||| ||| ||  ||| |||||||||||| ||||||||||||||   ||||||    
T  33379808 catcaatggtggtgaaactactgatgagaaggggtttcacaagcttaatgtccatatccctttggaatgtgatccaaactttaccttgaatcttagaagc 33379709  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
    |||||||||||| || ||||||   || |||| ||| | |||| |  |||| ||||||||||||||| | |   | |||||||||||||||||||| |||    
T  33379708 tccatatctcaaggttccaggtgttggatttaaagggtgatcactgtgatcggtaactttataatggattaagtctttaccaatgttgtttgtcattttt 33379609  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtc 255  Q
    || ||||| || || |||||| | || ||||||||||    
T  33379608 cccgcatatcccaccgagcaattagcaagttgttgtc 33379572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 33399523 - 33399305
Alignment:
Q  21 tcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagctc 120  Q
    |||||||| || |||||||| |||||||| ||  | |  |||||||||||||| || |||| |||||||||||| ||||||||||||||   ||||||||    
T  33399523 tcaatggtagtaaaactgctaatgagaagcggtctcacaagtttaatgttcatatccttttggaatgtgatccaaactttaccttgaatcttagaagctc 33399424  T
Q  121 catatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatctttcc 220  Q
    |||||||||| || ||||||   || |||| ||| || ||| |  |||| ||||||||||||||| | ||  | |||||||||||||||||||| || ||    
T  33399423 catatctcaatgttccaggtcttggatttaaagggtcgtcactatgatcggtaactttataatggattaggtctttaccaatgttgtttgtcattttccc 33399324  T
Q  221 agcatagcctacagagcaa 239  Q
     ||||| || || ||||||    
T  33399323 tgcatatcccactgagcaa 33399305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 33386784 - 33386548
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||| |||||||| |||||||||||||| || |  || ||||||| ||| ||  ||| |||||||||||| ||||||||||||||   ||||||    
T  33386784 catcaatggtggtgaaactactgatgagaaggggtttcacaagcttaatgtccatatccctttggaatgtgatccaaactttaccttgaatcttagaagc 33386685  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatcttt 218  Q
     ||||||||||| || ||||||   || |||| ||| |  ||| |  |||| ||||||||||||||| | |   | |||||||||||||||||||| |||    
T  33386684 accatatctcaaggttccaggtcttggatttaaagggtggtcactgtgatcggtaactttataatggattaagtctttaccaatgttgtttgtcattttt 33386585  T
Q  219 ccagcatagcctacagagcaagttgctagttgttgtc 255  Q
    || ||||| || || |||||| | || ||||||||||    
T  33386584 cccgcatatcccaccgagcaattagcaagttgttgtc 33386548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 255
Target Start/End: Original strand, 30636612 - 30636836
Alignment:
Q  31 tgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagctccatatctcaa 130  Q
    ||||||| || ||||||||||| || |  || ||||||||||||||| ||| |||||||| ||| |||||||||| || |  ||||||||| ||||| ||    
T  30636612 tgaaactactaatgagaaggggtttcacaagattaatgttcatgtctctttggaatgtgacccaaactttaccttaaactttagaagctccgtatcttaa 30636711  T
Q  131 cgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcatctttccagcatagcct 230  Q
     || || |||   || |||| ||| |  ||| | |||||| |||||||||||||| | || || || ||||||||||||||||| ||||| ||||||||     
T  30636712 ggtgcctggtcttggatttaaagggtggtcactaggatcaataactttataatggattaggcctttgccaatgttgtttgtcatttttcctgcatagccc 30636811  T
Q  231 acagagcaagttgctagttgttgtc 255  Q
    || ||||||||||| ||||||||||    
T  30636812 actgagcaagttgcaagttgttgtc 30636836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 36447135 - 36447195
Alignment:
Q  195 ttaccaatgttgtttgtcatctttccagcatagcctacagagcaagttgctagttgttgtc 255  Q
    ||||| |||||||||||||| ||||| |||||||| || |||||||| |  ||||||||||    
T  36447135 ttacctatgttgtttgtcatttttcctgcatagcccaccgagcaagtggtaagttgttgtc 36447195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 9815125 - 9815320
Alignment:
Q  19 catcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagc 118  Q
    |||||||||| |||||||| ||||||||||||||  | |  || |||||||||||||   |||||||||||||||| ||||| ||||||||   ||| ||    
T  9815125 catcaatggtggtgaaactactgatgagaaggggtctcacaagcttaatgttcatgttccttttgaatgtgatccaaacttttccttgaatcctagatgc 9815224  T
Q  119 tccatatctcaacgtaccaggttgaggttttataggatcatcatttggatcagtaactttataatgggtgagacccttaccaatgttgtttgtcat 214  Q
    |||||||||||| || ||||||   || |||| ||| |  ||| | ||||| ||||||||||||||| | |   ||||||| ||||||||||||||    
T  9815225 tccatatctcaaggttccaggtgctggatttaaagggtggtcactaggatcggtaactttataatggattaagtccttacctatgttgtttgtcat 9815320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 140
Target Start/End: Complemental strand, 24032552 - 24032433
Alignment:
Q  21 tcaatggttgtgaaactgctgatgagaaggggctttatgagtttaatgttcatgtcttttttgaatgtgatccacactttaccttgaattacagaagctc 120  Q
    |||||||| |||||||| ||||||||||||||  | |  || |||||||||||||   |||||||||||||||| ||||| ||||||||   ||| ||||    
T  24032552 tcaatggtggtgaaactactgatgagaaggggtctcacaagcttaatgttcatgttccttttgaatgtgatccaaactttgccttgaatcttagatgctc 24032453  T
Q  121 catatctcaacgtaccaggt 140  Q
    |||||||||| || ||||||    
T  24032452 catatctcaaggttccaggt 24032433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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