View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_3 (Length: 611)
Name: NF12182_low_3
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 10 - 592
Target Start/End: Original strand, 25632704 - 25633284
Alignment:
| Q |
10 |
aacctgtggcaaaacattcccaaaagcaataatctcactattaaatttgaaaatcaacatagtctaacagtaagttacattccatcctgaagaaattata |
109 |
Q |
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| T |
25632704 |
aacctctggcaaaacattcccaaaagcaataatctcactattaaatttgaaaatcaacatagtctaacaataagttacattccatcttgaagaaattata |
25632803 |
T |
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| Q |
110 |
tcaaacaatacaaattaaaatcaattcaaactttattattattgttctaagaagnnnnnnnnncacaaaaagtaaattgataagtataaccatatcctct |
209 |
Q |
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| T |
25632804 |
taaaacaatacaa-ttaagatcaattcaaactttattattattgttctaagaaaaaaaaaacaca-aaaaagtaaattgataagtataaccatatcctct |
25632901 |
T |
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| Q |
210 |
tccttgcataataacttattcctagagcctcaaatagatcaagaatctactttgatacaccattaggcaatgcaagagttttttcatcaaatgggttaag |
309 |
Q |
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| T |
25632902 |
tccttgcataataacttattactagagcctcaaatagatcaagaatctactttgatacaccattaggcaatgcaagagttttttcatcaaatgggttaag |
25633001 |
T |
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| Q |
310 |
ctcatcccaaacttcaatccaagtgaccatagcatcagcaagcttgttgaagtagtcatcaaccaatccaagttttgctttaacttgtttggagagttca |
409 |
Q |
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| T |
25633002 |
ttcatcccaaacttcaatccaagtgaccatagcatcagcaagcttgttgaagtagtcatcaaccaatccaagttttgctttaacttgtttggagagttca |
25633101 |
T |
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| Q |
410 |
atgtagcatttttgaggagttgtgcattcctttggaagagaaacagattggaaaaatgggataagctcttcctgccagtaaattcctttgtactctttct |
509 |
Q |
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| T |
25633102 |
atgtagcatttttgaggagttgtgcattcctttggaagagaaacagattggaaaaatgggataagctcttcctgccagtaaattcctttgtactctttct |
25633201 |
T |
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| Q |
510 |
taagattcacaaatgggttgctagctttgctgtgccagatataaggtaaacctgtcttcactcccaatcccaaatggtcactt |
592 |
Q |
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| T |
25633202 |
taagattcacgaatgggttgctagctttgctgtgccagatataaggtaaacctgtcttcactcccaatcccaaatggtcactt |
25633284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 8e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 302 - 590
Target Start/End: Original strand, 5579241 - 5579529
Alignment:
| Q |
302 |
gggttaagctcatcccaaacttcaatccaagtgaccatagcatcagcaagcttgttgaagtagtcatcaaccaatccaagttttgctttaacttgtttgg |
401 |
Q |
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| T |
5579241 |
gggttaagttgatcccaagcttcaatccaagtgaccatagcatctgcaagcttgtcaaaataaggatcaatctttccaagtttttccttgacttgtttgg |
5579340 |
T |
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| Q |
402 |
agagttcaatgtagcatttttgaggagttgtgcattcctttggaagagaaacagattggaaaaatgggataagctcttcctgccagtaaattcctttgta |
501 |
Q |
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| T |
5579341 |
acatttcaatgtaacacttttgaacagttgtggcttcttttggaagagcaagactttgaaaaaatggaatgatgtcttcctgccagaaaatgcctttgta |
5579440 |
T |
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| Q |
502 |
ctctttcttaagattcacaaatgggttgctagctttgctgtgccagatataaggtaaacctgtcttcactcccaatcccaaatggtcac |
590 |
Q |
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| T |
5579441 |
ctctttccttagattcacaaatgggttacttgctttgctatgaaagatataggggagaccagtcttgattccaagtcccaaatgatcac |
5579529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 304 - 590
Target Start/End: Complemental strand, 20179228 - 20178942
Alignment:
| Q |
304 |
gttaagctcatcccaaacttcaatccaagtgaccatagcatcagcaagcttgttgaagtagtcatcaaccaatccaagttttgctttaacttgtttggag |
403 |
Q |
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| T |
20179228 |
gttaatctcatcccaagcttcaatccaagtgaccatggcatcagctagtttgacgaaatagggatcaatagttccaagtttctccttgacttgcttcgag |
20179129 |
T |
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| Q |
404 |
agttcaatgtagcatttttgaggagttgtgcattcctttggaagagaaacagattggaaaaatgggataagctcttcctgccagtaaattcctttgtact |
503 |
Q |
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| T |
20179128 |
agttcaatgtagcatttctgaacagaggtgcaatcttttgaaagggttgcagcttggaaaaatggaatgatctcttcttgccagaagatacctttgtact |
20179029 |
T |
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| Q |
504 |
ctttcttaagattcacaaatgggttgctagctttgctgtgccagatataaggtaaacctgtcttcactcccaatcccaaatggtcac |
590 |
Q |
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| T |
20179028 |
cctttttcagattcacaaatgggttacttgctttgctgtgccaaatgtatggaagtccagtcttcactccaagtcccaaatggtcac |
20178942 |
T |
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