View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12182_low_4 (Length: 534)

Name: NF12182_low_4
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12182_low_4
NF12182_low_4
[»] chr2 (13 HSPs)
chr2 (1-325)||(2836243-2836560)
chr2 (355-527)||(14634592-14634765)
chr2 (364-525)||(28569071-28569235)
chr2 (369-524)||(21519348-21519503)
chr2 (365-524)||(6263141-6263299)
chr2 (365-524)||(31733865-31734024)
chr2 (364-508)||(41303931-41304075)
chr2 (362-523)||(42018501-42018661)
chr2 (365-494)||(22404976-22405106)
chr2 (399-524)||(36559864-36559988)
chr2 (399-524)||(35216689-35216814)
chr2 (476-524)||(16604651-16604699)
chr2 (476-524)||(27894186-27894234)
[»] chr1 (23 HSPs)
chr1 (364-534)||(13548285-13548455)
chr1 (363-534)||(50167951-50168123)
chr1 (364-534)||(776468-776639)
chr1 (365-534)||(28222026-28222196)
chr1 (365-534)||(28221655-28221825)
chr1 (367-534)||(28242980-28243147)
chr1 (410-527)||(31658543-31658661)
chr1 (352-534)||(31928865-31929046)
chr1 (352-455)||(19753442-19753546)
chr1 (365-524)||(13126389-13126547)
chr1 (365-496)||(31424021-31424151)
chr1 (365-508)||(28202347-28202490)
chr1 (370-524)||(6996718-6996872)
chr1 (365-496)||(16430108-16430240)
chr1 (365-524)||(25249637-25249797)
chr1 (399-524)||(16227603-16227727)
chr1 (365-484)||(14098911-14099030)
chr1 (399-524)||(47178797-47178922)
chr1 (399-524)||(51751472-51751597)
chr1 (425-524)||(27337874-27337974)
chr1 (397-524)||(31736529-31736656)
chr1 (385-508)||(50077800-50077923)
chr1 (448-524)||(28841792-28841868)
[»] chr3 (35 HSPs)
chr3 (364-534)||(29812265-29812435)
chr3 (352-523)||(9635088-9635260)
chr3 (364-518)||(5258924-5259079)
chr3 (364-523)||(23198740-23198900)
chr3 (352-523)||(7763675-7763847)
chr3 (364-523)||(4599319-4599479)
chr3 (364-523)||(6717917-6718078)
chr3 (364-523)||(10057653-10057813)
chr3 (364-523)||(10059875-10060035)
chr3 (364-523)||(10062097-10062257)
chr3 (364-523)||(10064319-10064479)
chr3 (364-523)||(10066541-10066701)
chr3 (364-523)||(10210606-10210766)
chr3 (365-527)||(32892491-32892653)
chr3 (365-493)||(890892-891021)
chr3 (365-524)||(28138227-28138386)
chr3 (365-508)||(15824461-15824601)
chr3 (365-505)||(28100994-28101134)
chr3 (369-524)||(3315795-3315950)
chr3 (367-453)||(43403032-43403119)
chr3 (365-524)||(18097818-18097977)
chr3 (365-496)||(23634904-23635036)
chr3 (365-524)||(43422457-43422615)
chr3 (365-524)||(53916660-53916819)
chr3 (365-514)||(27422093-27422233)
chr3 (397-524)||(4309224-4309351)
chr3 (384-455)||(1619530-1619601)
chr3 (399-508)||(457337-457445)
chr3 (397-524)||(5898826-5898953)
chr3 (425-524)||(6064538-6064638)
chr3 (477-524)||(1619605-1619652)
chr3 (365-408)||(35918884-35918927)
chr3 (423-484)||(25634983-25635045)
chr3 (425-524)||(42991412-42991512)
chr3 (397-508)||(43227510-43227621)
[»] chr7 (25 HSPs)
chr7 (352-534)||(48490800-48490983)
chr7 (364-534)||(47674740-47674910)
chr7 (364-524)||(6593133-6593294)
chr7 (364-524)||(18390767-18390932)
chr7 (364-527)||(26214190-26214353)
chr7 (366-524)||(44726062-44726221)
chr7 (368-517)||(6047962-6048110)
chr7 (365-524)||(38395428-38395587)
chr7 (352-499)||(44011484-44011632)
chr7 (364-455)||(4509843-4509935)
chr7 (364-455)||(4511685-4511777)
chr7 (365-484)||(24749770-24749889)
chr7 (365-508)||(24816014-24816157)
chr7 (399-524)||(7093180-7093305)
chr7 (399-524)||(28486708-28486833)
chr7 (399-524)||(22136248-22136372)
chr7 (399-524)||(40551275-40551399)
chr7 (397-524)||(20298423-20298550)
chr7 (399-524)||(1048008-1048133)
chr7 (365-524)||(9679801-9679958)
chr7 (397-524)||(43683-43810)
chr7 (365-484)||(21679242-21679361)
chr7 (368-429)||(6068019-6068080)
chr7 (385-433)||(6430927-6430975)
chr7 (399-524)||(7350372-7350495)
[»] chr5 (23 HSPs)
chr5 (364-533)||(13487421-13487590)
chr5 (364-523)||(26174186-26174346)
chr5 (364-526)||(535138-535301)
chr5 (364-523)||(16408706-16408866)
chr5 (352-519)||(42427021-42427189)
chr5 (367-523)||(16545848-16546005)
chr5 (364-523)||(29721779-29721941)
chr5 (364-523)||(40381524-40381684)
chr5 (364-523)||(13295047-13295206)
chr5 (365-524)||(27911566-27911725)
chr5 (365-484)||(18510400-18510519)
chr5 (365-496)||(20044134-20044264)
chr5 (399-524)||(23666482-23666606)
chr5 (399-524)||(34478139-34478263)
chr5 (425-524)||(6746506-6746606)
chr5 (425-524)||(15355594-15355693)
chr5 (399-524)||(31544168-31544293)
chr5 (365-505)||(659171-659311)
chr5 (399-524)||(10756329-10756453)
chr5 (365-484)||(20504853-20504972)
chr5 (365-484)||(31466896-31467015)
chr5 (366-421)||(41586994-41587049)
chr5 (425-524)||(18468157-18468257)
[»] chr8 (13 HSPs)
chr8 (364-523)||(34255107-34255267)
chr8 (364-534)||(4733026-4733197)
chr8 (364-500)||(41365617-41365756)
chr8 (365-524)||(31574552-31574711)
chr8 (362-508)||(17849091-17849237)
chr8 (362-524)||(42436228-42436377)
chr8 (365-508)||(41383857-41384000)
chr8 (352-453)||(40220628-40220729)
chr8 (365-524)||(15071948-15072105)
chr8 (399-524)||(18812198-18812322)
chr8 (399-524)||(43081092-43081216)
chr8 (392-496)||(21481713-21481818)
chr8 (425-524)||(27828475-27828575)
[»] chr4 (29 HSPs)
chr4 (352-534)||(54881979-54882161)
chr4 (364-534)||(12740334-12740505)
chr4 (364-534)||(12748540-12748711)
chr4 (364-533)||(34571203-34571369)
chr4 (364-523)||(8394826-8394986)
chr4 (364-524)||(7124115-7124276)
chr4 (364-523)||(5137500-5137660)
chr4 (352-508)||(36770655-36770812)
chr4 (364-524)||(10114030-10114190)
chr4 (365-484)||(22801758-22801877)
chr4 (365-524)||(47563943-47564103)
chr4 (365-484)||(24879740-24879859)
chr4 (415-521)||(26559077-26559183)
chr4 (365-508)||(36379429-36379573)
chr4 (365-524)||(12401743-12401902)
chr4 (365-508)||(16454509-16454652)
chr4 (365-524)||(36920519-36920678)
chr4 (396-524)||(22133298-22133426)
chr4 (365-508)||(14788419-14788562)
chr4 (365-508)||(5100023-5100164)
chr4 (415-497)||(18535877-18535960)
chr4 (365-469)||(47565851-47565955)
chr4 (425-524)||(9175217-9175317)
chr4 (399-524)||(11007288-11007412)
chr4 (399-524)||(16932868-16932992)
chr4 (399-508)||(22781457-22781565)
chr4 (365-452)||(12396801-12396888)
chr4 (362-462)||(35371522-35371622)
chr4 (399-524)||(22045433-22045558)
[»] chr6 (22 HSPs)
chr6 (364-523)||(16652346-16652506)
chr6 (364-523)||(16554084-16554244)
chr6 (364-523)||(16630640-16630800)
chr6 (364-523)||(34166292-34166452)
chr6 (364-485)||(5407725-5407847)
chr6 (364-485)||(5412050-5412172)
chr6 (413-534)||(16568361-16568482)
chr6 (352-485)||(5406945-5407078)
chr6 (352-485)||(5411270-5411403)
chr6 (364-517)||(30444763-30444916)
chr6 (364-505)||(11137559-11137700)
chr6 (365-524)||(3630929-3631088)
chr6 (365-508)||(15533622-15533766)
chr6 (369-524)||(3395446-3395601)
chr6 (364-499)||(24543468-24543600)
chr6 (365-465)||(26944596-26944697)
chr6 (364-478)||(10456220-10456333)
chr6 (399-524)||(26067117-26067241)
chr6 (365-440)||(28038652-28038727)
chr6 (399-524)||(33310324-33310448)
chr6 (383-450)||(17758814-17758881)
chr6 (476-524)||(22615107-22615155)
[»] scaffold1908 (1 HSPs)
scaffold1908 (364-534)||(758-929)
[»] scaffold0491 (1 HSPs)
scaffold0491 (365-523)||(9519-9678)
[»] scaffold0011 (1 HSPs)
scaffold0011 (366-524)||(35028-35187)
[»] scaffold0133 (1 HSPs)
scaffold0133 (365-462)||(3980-4078)
[»] scaffold0005 (1 HSPs)
scaffold0005 (365-508)||(51168-51311)
[»] scaffold1899 (1 HSPs)
scaffold1899 (399-524)||(1059-1184)
[»] scaffold0140 (1 HSPs)
scaffold0140 (399-524)||(23562-23687)
[»] scaffold1674 (1 HSPs)
scaffold1674 (425-524)||(532-632)
[»] scaffold0025 (1 HSPs)
scaffold0025 (425-524)||(70272-70372)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 8e-81; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2836243 - 2836560
Alignment:
Q  1 ctaaattgttcaatcacacaggtcagagaagagaaactgaaacgtttaaaattggttcaattagtttctcttatatgacatttgcgattgaacaatttta 100  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||||||||||           ||| ||||||||||||||||||||    
T  2836243 ctaaattgttcgatcatacaggtcagagaagagaaactgaaatgtttaaaactggttcaattagt-----------gacctttgcgattgaacaatttta 2836331  T
Q  101 aacatttgttccctacacttttacttgtatga----ttacaatctctagaaataatttgtacaaacttttcatgttaagnnnnnnnatggtattaaacaa 196  Q
    ||||||||||||||||||||||||||||||||    ||||||||||||||| ||||| ||||||||||||| ||| |||       ||||||||||||||    
T  2836332 aacatttgttccctacacttttacttgtatgaatgattacaatctctagaattaattagtacaaacttttcctgtaaagattttttatggtattaaacaa 2836431  T
Q  197 ggctagttctgatgtatgcaaaccgtgtagattgtgcaatatagacaactattttcttctgtatgattgaacaatttcatagatcaaaaggttatgcgtc 296  Q
    |||||||||| |||| | |||||| ||||||||||||||  ||  ||||||||||| ||  |||||||||||| |||||||||||||||||| || ||||    
T  2836432 ggctagttctaatgtgtacaaaccatgtagattgtgcaaggtaagcaactattttcgtccatatgattgaacagtttcatagatcaaaaggtgattcgtc 2836531  T
Q  297 tacacaaaattcgagctcaaatactttgt 325  Q
    ||||||||||  |||||||||||||||||    
T  2836532 tacacaaaatctgagctcaaatactttgt 2836560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 355 - 527
Target Start/End: Original strand, 14634592 - 14634765
Alignment:
Q  355 aagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagt 453  Q
    |||||||| |||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||    
T  14634592 aagcaacgccatatattcttcaaaccctggaatgccttccgtcctcttgaagaattctcatgctcacaactagagcataacacccaaggccctccatagt 14634691  T
Q  454 cgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacac 527  Q
    || |||||| |||||||||  |||||||||| |||||||| |||||||||| ||| |||||| |||||||||||    
T  14634692 cgtaccatttccggtgtcactaactccacctcaagttgagatttctctaccccaacttccaattgcgtacacac 14634765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 364 - 525
Target Start/End: Original strand, 28569071 - 28569235
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaacca--- 460  Q
    |||||||||||||||  |||||||||||||| ||||| |||||||||  | ||||||||||||||| |||||||||  || ||||||||||| ||||       
T  28569071 catacattcttcaaaccccggaatgccttccatcctcttgaagaattaccttgctcacaactagagaatagcaccctaggtctccatagtcgtaccaata 28569170  T
Q  461 ttcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacac 525  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  28569171 ttccaggtgtcatcaactccaccttaagctgagctttctctacctcaacttccaaatgcgtacac 28569235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 369 - 524
Target Start/End: Original strand, 21519348 - 21519503
Alignment:
Q  369 attcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccgg 467  Q
    |||||||||  |||||||||||||||||| |||||||||| || | ||||||| | |||||||||||||||| || |||||||||||| |||||| ||||    
T  21519348 attcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccattaccgg 21519446  T
Q  468 tgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  21519447 tgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 21519503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 6263141 - 6263299
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  ||| ||||| |||| ||| |||||||||| || | |||||||  ||||||||||||||||| || |||||||||||| ||||||     
T  6263141 atacattcttcaacctccagaatgtcttctgtcttcatgaagaaatcccttgctcac--ctagagcatagcacccaaggtcctccatagtcgtaccatta 6263238  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| ||| ||||| | ||||||||||| |  ||||||||||||    
T  6263239 ccggtgtgttcaactccacctcaagctgagcgtactctacctcaactagcaaatgcgtaca 6263299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 31733865 - 31734024
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| ||| |||| |||||||||| |||| ||||||| | ||||||||||||||| ||| | |||||||||| ||||||     
T  31733865 atacattcttcaacctccggaatgtctttcgtcttcatgaagaaatcacttgctcacca-tagagcatagcacccaaggtcttccatagtcgtaccatta 31733963  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||| |||  |||||||||||| ||| ||||  | ||||||||||| |  ||||||||||||    
T  31733964 ccgatgtgttcaactccacctcaagctgagtgtactctacctcaactagcaaatgcgtaca 31734024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 364 - 508
Target Start/End: Original strand, 41303931 - 41304075
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||| ||||||  |||||||  |||  |||||| |||||||||| | |||||||||||||||| ||||||||| |  ||||||||| | |||||||    
T  41303931 catacattattcaaaccccggaatttcttttgtcctcttgaagaattcccttgctcacaactagagcctagcacccaagatctccatagttgtaccattc 41304030  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    ||| ||||||||| ||||||| ||| |  ||| ||||||||||||    
T  41304031 ccgatgtcatcaattccacctcaagctatgctatctctacctcaa 41304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 362 - 523
Target Start/End: Original strand, 42018501 - 42018661
Alignment:
Q  362 gtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccat 461  Q
    |||||||||||||||| | | |||||||||||| ||||| |||||||||| | ||||||||||||||||||| |||  | || ||||||||||  || ||    
T  42018501 gtcatacattcttcaactcctggaatgccttccatcctcttgaagaattcccctgctcacaactagagcataccactaaaggtctccatagtcatactat 42018600  T
Q  462 tcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |  | |||||||| ||| ||||| ||| |||| |||   |||||||| ||| ||||||||||    
T  42018601 t-tcagtgtcatccacttcacctcaagctgagtttttattacctcaacttctaaatgcgtac 42018661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 365 - 494
Target Start/End: Complemental strand, 22405106 - 22404976
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac-ccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||||||| |||| |||||||||| || | ||||||| ||||||||||| ||| | ||| ||||||||| |  ||||||     
T  22405106 atacattcttcaacctccggaatgcctttcgtcttcatgaagaaatcccttgctcaccactagagcataacactcaaggtcctccatagccataccatta 22405007  T
Q  464 ccggtgtcatcaactccaccttaagttgagc 494  Q
    |||||||  |||| ||||||| ||| |||||    
T  22405006 ccggtgtgttcaattccacctcaagctgagc 22404976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 36559864 - 36559988
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  36559864 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 36559962  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  36559963 tctacctcaactagcaaatgcgtaca 36559988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 35216689 - 35216814
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  35216689 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 35216787  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  35216788 ctctacctcaactagcaaatgcgtaca 35216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 16604699 - 16604651
Alignment:
Q  476 actccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||| |||||    
T  16604699 actccacctgaagttgagctttctccacctcaacttccaaatgtgtaca 16604651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 27894234 - 27894186
Alignment:
Q  476 actccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||| |||||||||||||| || ||||| |||||||| ||||||    
T  27894234 actccacctcaagttgagctttctatatctcaaattccaaatccgtaca 27894186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 364 - 534
Target Start/End: Original strand, 13548285 - 13548455
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||| | |||||||    
T  13548285 catacattcttcaaaccccggaatgccttccgtcctcatgaagaattcacatgctcacaactagaacatagcactcaaggcctccatagttgtaccattc 13548384  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  13548385 ccggtgtcatcaactccaccttaagttgagctttctctaccttaacttccaaatgcgtacacacactatgc 13548455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 363 - 534
Target Start/End: Original strand, 50167951 - 50168123
Alignment:
Q  363 tcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccat 461  Q
    ||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| |||||    
T  50167951 tcatacatttttcaaaccccggaatgcctttcgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaggcctccatagtcgtaccat 50168050  T
Q  462 tcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    | ||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||| ||||||    
T  50168051 ttccggtgtcatcaactccacctcaagttgagttttctctacctcaacttccaaatgtgtacacacactatgc 50168123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 364 - 534
Target Start/End: Complemental strand, 776639 - 776468
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||| | ||||||    
T  776639 catacagtcttcaaaccccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaggcctccatagtggtaccatt 776540  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
     ||||||| ||||||||||||| |||||||||||| |||||||||| ||||||||||||| |||| ||||||    
T  776539 tccggtgttatcaactccacctcaagttgagctttatctacctcaacttccaaatgcgtatacacactatgc 776468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 28222026 - 28222196
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccattc 463  Q
    ||||||| ||||||  |||||||| |||| |||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||   |||||||    
T  28222026 atacattattcaaaccccggaatggcttctgtcctcatgaagaattcacatgctcacaactagagcataaacacctaaggcctccatagttataccattc 28222125  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  28222126 ccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgcgtacacacactatgc 28222196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 365 - 534
Target Start/End: Original strand, 28221655 - 28221825
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccattc 463  Q
    ||||||| ||||||  ||| ||||||||| |||||||||||||||||||||||||||||||||||||||  |||| | ||||||||||||   |||||||    
T  28221655 atacattattcaaaccccgtaatgccttctgtcctcatgaagaattcacatgctcacaactagagcataaacaccaaaggcctccatagttataccattc 28221754  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||| ||||||    
T  28221755 ccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgcatacacacactatgc 28221825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 367 - 534
Target Start/End: Complemental strand, 28243147 - 28242980
Alignment:
Q  367 acattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccg 466  Q
    ||||||||||||   |||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||||||   |||||||||||| ||||||||||    
T  28243147 acattcttcaaaccacggaatgctttccgtcctcatggagaattcacatgctcacaaatagagcataacacccaatacctccatagtcgtaccattcccg 28243048  T
Q  467 gtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    ||||||  ||||||||||  |||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  28243047 gtgtcactaactccacctctagttgagctttctctacctcaacttccaaatgtgtacacacactatgc 28242980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 410 - 527
Target Start/End: Complemental strand, 31658661 - 31658543
Alignment:
Q  410 tcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    ||||||||||||||||||||||||  |||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31658661 tcacatgctcacaactagagcataaacacccaaggcctccatagtcgtaccattcccggtgtcatcaactccacctcaagttgagctttctctacctcaa 31658562  T
Q  509 tttccaaatgcgtacacac 527  Q
      ||||||||| |||||||    
T  31658561 cgtccaaatgcttacacac 31658543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 352 - 534
Target Start/End: Original strand, 31928865 - 31929046
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccata 451  Q
    ||||||||| | || |||||||||||   ||| |||| ||| ||||||| |||||||||| | ||||||||||||||||||| |||||| || |||||||    
T  31928865 cacaagcaatgccaaacattcttcaacccccgaaatgtctttcgtcctcttgaagaattctcttgctcacaactagagcatatcacccaaggtctccata 31928964  T
Q  452 gtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    |||| |||||||| ||||||| ||||||||||| |||| || ||||||||||||||| |||||||| ||||||||| ||||||    
T  31928965 gtcgtaccattcctggtgtcaccaactccacctcaagtcgaactttctctacctcaacttccaaat-cgtacacacactatgc 31929046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 352 - 455
Target Start/End: Complemental strand, 19753546 - 19753442
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccat 450  Q
    |||||| |||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  19753546 cacaagtaacgccatacattcttcaaaccccgaaatgccttccgtcctcatgaagaattcacatgctcacaactagagcataagcacccaaggcctccat 19753447  T
Q  451 agtcg 455  Q
    |||||    
T  19753446 agtcg 19753442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 13126389 - 13126547
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcc 464  Q
    |||| ||||||||| | |||||||||||  ||| ||||||||||||  | ||||||||||||||||||| |||  ||| |||| ||||||| ||||||      
T  13126389 atactttcttcaaacttcggaatgccttttgtcttcatgaagaatttccttgctcacaactagagcataacaca-aggtcctctatagtcgtaccatttt 13126487  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||  ||||||||||||  || ||||||||||||||||||| |||||||||||||||    
T  13126488 cagtgtgttcaactccacctctagctgagctttctctacctcaacttccaaatgcgtaca 13126547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 365 - 496
Target Start/End: Original strand, 31424021 - 31424151
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || | |||||||  |||||||||||||||| ||| || ||||||||| || |||     
T  31424021 atacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcac--ctagagcatagcacccaaggtcccccatagtcgtactatta 31424118  T
Q  464 ccggtgtcatcaactccaccttaagttgagctt 496  Q
    |||||||  |||||||||||| ||| |||||||    
T  31424119 ccggtgtgttcaactccacctcaagctgagctt 31424151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 508
Target Start/End: Original strand, 28202347 - 28202490
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| ||||||||||  | | ||||||| | ||||||||||||||| ||| ||||||||||||  |||||     
T  28202347 atacattcttcaacctccggaatgccttccgtcttcatgaagaaaacccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtgccatta 28202445  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    ||| |||  |||||||||||| ||| ||||| | |||||||||||    
T  28202446 ccgatgtgttcaactccacctcaagctgagcgtactctacctcaa 28202490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 370 - 524
Target Start/End: Complemental strand, 6996872 - 6996718
Alignment:
Q  370 ttcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattcccggt 468  Q
    ||||||||  |||||||||||||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| ||||||||| || |||||| ||| |    
T  6996872 ttcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagccgtaccattaccgat 6996774  T
Q  469 gtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  6996773 gtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 6996718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 16430240 - 16430108
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagca-cccagggcctccatagtcgaaccattc 463  Q
    ||||||||| |||  | |||||||||||||||| |||||||||| || | ||||||| ||||||||||| || || ||| ||||||||| || ||||||     
T  16430240 atacattctccaaccttcggaatgccttccgtcttcatgaagaaatcccttgctcaccactagagcataacatccaaggtcctccatagccgtaccatta 16430141  T
Q  464 ccggtgtcatcaactccaccttaagttgagctt 496  Q
    | |||||  |||||||||||||||| |||||||    
T  16430140 ctggtgtgttcaactccaccttaagctgagctt 16430108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 25249637 - 25249797
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    ||||||| |||||  ||| |||||||||| ||| |||||||||| || | ||||||| |||||| |||||||||| ||| |||||||||||  || |||     
T  25249637 atacattattcaacctccagaatgccttctgtcttcatgaagaaatcccttgctcaccactagatcatagcacccaaggtcctccatagtcatacgattt 25249736  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| |||| |||  | |||||||||||||  |||||| |||||    
T  25249737 ccggtgtgttcaactccacctcaagtagagtgtactctacctcaattagcaaatgtgtaca 25249797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 16227727 - 16227603
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  16227727 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 16227629  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  16227628 tctacctcaactagcaaatgcgtaca 16227603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 14098911 - 14099030
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||| |||||||||||||| |||||||||| || | ||||||| | ||||||||| ||||| ||| ||||||||| |  ||||||     
T  14098911 atacattcttcaacctccagaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcataacacccaaggtcctccatagacataccatta 14099009  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  ||||||||||||    
T  14099010 ccggtgtgttcaactccacct 14099030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 47178922 - 47178797
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  47178922 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 47178824  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  47178823 ctctacctcaactagcaaatgcgtaca 47178797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 51751597 - 51751472
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  51751597 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 51751499  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  51751498 ctctacctcaactagcaaatgcgtaca 51751472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 27337874 - 27337974
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || |||||||||||||| |||| |||||||  ||||||||||||   | ||||| | ||||||||||| |  |||||||||||    
T  27337874 tagagcatagcacccaaggtcctccatagtcgaaacattaccggtgtgttcaactccacctcgcgctgagcgtactctacctcaactagcaaatgcgtac 27337973  T
Q  524 a 524  Q
    |    
T  27337974 a 27337974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 524
Target Start/End: Original strand, 31736529 - 31736656
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccagggc-ctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | |||||||||||||||| ||  |||||||| || |||||| |||||||  |||||||||||| | | |||||     
T  31736529 cctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggttctccatagccgtaccattaccggtgtgttcaactccacctcacgctgagcg 31736627  T
Q  496 ttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||||||||| |  ||||||||||||    
T  31736628 tactctacctcaactagcaaatgcgtaca 31736656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 508
Target Start/End: Original strand, 50077800 - 50077923
Alignment:
Q  385 aatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggc-ctccatagtcgaaccattcccggtgtcatcaactccacc 483  Q
    ||||||||||||| |||||||||| || | ||||||| | |||||||||||| ||| ||  ||||||||||| ||||||  ||||||  |||||||||||    
T  50077800 aatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcatccaaggttctccatagtcgtaccattatcggtgtgttcaactccacc 50077898  T
Q  484 ttaagttgagctttctctacctcaa 508  Q
    | | | ||||  | |||||||||||    
T  50077899 tcacgctgagtgtactctacctcaa 50077923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 524
Target Start/End: Complemental strand, 28841868 - 28841792
Alignment:
Q  448 catagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||| |||||| |||||||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  28841868 catagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 28841792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 6e-63; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 364 - 534
Target Start/End: Complemental strand, 29812435 - 29812265
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||||  || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||| || ||| |||||||| | |||||||    
T  29812435 catacattcttcaaaccccagaatgccttccgttctcatgaagaattcacaagctcacaactagagcatagcactcaaggcatccatagttgtaccattc 29812336  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  29812335 ccggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgcgtacacacactatgc 29812265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 352 - 523
Target Start/End: Original strand, 9635088 - 9635260
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccat 450  Q
    ||||||| || ||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||  || ||| |||||||||    
T  9635088 cacaagctacatcatacattcttcaaaccccggaatgccttccatcctcatgaagaattcacatgctcacaactagagcataaacaaccaaggcctccat 9635187  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9635188 agtcgtaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgagtac 9635260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 364 - 518
Target Start/End: Original strand, 5258924 - 5259079
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||  ||||||||||||| ||||||    
T  5258924 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaagcctccatagtcgtaccatt 5259023  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatg 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  5259024 cccggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatg 5259079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 364 - 523
Target Start/End: Original strand, 23198740 - 23198900
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||  ||||||    
T  23198740 catacattcttcaaaccccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaagcctccatagtcataccatt 23198839  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  23198840 cccgatgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgagtac 23198900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 352 - 523
Target Start/End: Complemental strand, 7763847 - 7763675
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccat 450  Q
    |||||||||||||||||||||||||||  || ||||| ||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||||||    
T  7763847 cacaagcaacgtcatacattcttcaaaccccagaatgtcttccgtcctcatgaagaattcatatgctcacacctagagcataaacacccaaggcctccat 7763748  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| ||||||| ||||||||  |||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  7763747 agtcgtaccattctcggtgtcacaaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 7763675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 523
Target Start/End: Original strand, 4599319 - 4599479
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||||||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  4599319 catacattcttcaaaccccggaataccatccgtcctcatgaagaattcacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 4599418  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  4599419 cccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 4599479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 6718078 - 6717917
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  | ||||| ||| |||||||||||||||||||||||||||||||||||||||| | | ||||  ||||||||||||  ||||||    
T  6718078 catacattcttcaaaccctggaatacctcccgtcctcatgaagaattcacatgctcacaactagagcataaactcccaaagcctccatagtcataccatt 6717979  T
Q  463 -cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||    
T  6717978 ccccggtgtcatcaactccacctcaagttgaactttctctacctcaacttccaaatgagtac 6717917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10057813 - 10057653
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10057813 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10057714  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10057713 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 10057653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10060035 - 10059875
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10060035 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10059936  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10059935 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 10059875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10062257 - 10062097
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10062257 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10062158  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10062157 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 10062097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10064479 - 10064319
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10064479 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10064380  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10064379 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 10064319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10066701 - 10066541
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10066701 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10066602  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10066601 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 10066541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 10210766 - 10210606
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || || ||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  10210766 catacattcttcaaaccccggaataccatctgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 10210667  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |  || |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  10210666 cttggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgggtac 10210606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 365 - 527
Target Start/End: Complemental strand, 32892653 - 32892491
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcc 464  Q
    |||||||||||||| | || || ||||||||||||| |||||||||    |||||| ||||||||| || |||||| |  ||||||||| | ||||||      
T  32892653 atacattcttcaaacttcgaaaggccttccgtcctcttgaagaatttctttgctcaaaactagagcctaacacccaagatctccatagttgtaccatttt 32892554  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacac 527  Q
    ||||||||  |||||||||| |||||||||||||||| |||||| || |||||||||||||||    
T  32892553 cggtgtcactaactccacctcaagttgagctttctctgcctcaactttcaaatgcgtacacac 32892491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 365 - 493
Target Start/End: Original strand, 890892 - 891021
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||| || | ||||||| ||||||||||||||||| |||  ||||||||||| ||||||     
T  890892 atacattcttcaacctccggaatgtcttccgtcttcatgaagaaatcccttgctcaccactagagcatagcacccaaggtactccatagtcgtaccatta 890991  T
Q  464 ccggtgtcatcaactccaccttaagttgag 493  Q
    |||||||  |||||||||||| ||| ||||    
T  890992 ccggtgtgttcaactccacctcaagctgag 891021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 28138227 - 28138386
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcc-tccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||||||| |||| |||||||||| || | ||||| | | |||||||||||||||| || | |||||||||| ||||||     
T  28138227 atacattcttcaacctccggaatgcctttcgtcttcatgaagaaatcccttgctcgcca-tagagcatagcacccaaggtcatccatagtcgtaccatta 28138325  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| ||| ||||| | ||||||||||| |  ||||||||||||    
T  28138326 ccggtgtgttcaactccacctcaagctgagcgtactctacctcaactagcaaatgcgtaca 28138386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 365 - 508
Target Start/End: Original strand, 15824461 - 15824601
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcc 464  Q
    ||||||||||||||   | ||||| ||||||||||| |||||||||||| ||||| ||||||||||||| |||| | || ||  ||||| | ||||| ||    
T  15824461 atacattcttcaaacctcagaatgacttccgtcctcttgaagaattcacttgctcgcaactagagcataacacctaaggtcttaatagttgtaccatgcc 15824560  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    ||||||||||||||||||   ||| |||| ||||||||||||||    
T  15824561 cggtgtcatcaactccac---aagatgagatttctctacctcaa 15824601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 505
Target Start/End: Original strand, 28100994 - 28101134
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||| ||||||||||||| |||||||||| || | ||||||| | ||||||||| ||||| ||| ||| |||||||| ||||||     
T  28100994 atacattcttcaacctccgaaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcataacacccaaggtccttcatagtcgtaccatta 28101092  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacct 505  Q
    |||||||  |||||||||||| ||| ||||| | ||||||||    
T  28101093 ccggtgtgttcaactccacctcaagctgagcgtactctacct 28101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 369 - 524
Target Start/End: Complemental strand, 3315950 - 3315795
Alignment:
Q  369 attcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccgg 467  Q
    |||||||||  ||||||||| |||||||| |||||||||| || | ||||||| | |||||||||||||||| || |||||||||||  |||||| ||||    
T  3315950 attcttcaacctccggaatgtcttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcataccattaccgg 3315852  T
Q  468 tgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||  | ||||||| || ||| ||||| | ||||||||||| |  ||||||||||||    
T  3315851 tgttttaaactccagctcaagctgagcgtactctacctcaactagcaaatgcgtaca 3315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 367 - 453
Target Start/End: Original strand, 43403032 - 43403119
Alignment:
Q  367 acattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagt 453  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||  |||||||||||    
T  43403032 acattcttcaacccccggaatgccttccgtcctcatgaagaattcacatgctcgctactagagcataaacacccaaagcctccatagt 43403119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 18097818 - 18097977
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  ||| |||||||||||||| |||||||||| || | ||||||| | |||||||| ||||||| || |||||||||||| ||||||     
T  18097818 atacattcttcaacctccagaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatggcacccaaggtcctccatagtcgtaccatta 18097916  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  | || ||||||| | | ||||| | ||||||||||| |   |||||||||||    
T  18097917 ccggtgtgttaaattccacctcatgctgagcgtactctacctcaactagaaaatgcgtaca 18097977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 23635036 - 23634904
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacc-cagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  | |||||||||||||||| |||||||||| || | ||||||| | ||||||||| ||||  ||| ||||||||| || ||||||     
T  23635036 atacattcttcaaccttcggaatgccttccgtcttcatgaagaaatcccttgctcaccagtagagcataacaccgaaggtcctccatagccgtaccatta 23634937  T
Q  464 ccggtgtcatcaactccaccttaagttgagctt 496  Q
    | |||||  |||||||||||| ||| |||||||    
T  23634936 ctggtgtgttcaactccacctcaagctgagctt 23634904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 43422457 - 43422615
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| | ||||| ||| | | | ||||| | |||||||||||||||| || |||||||||||  ||||||     
T  43422457 atacattcttcaacctccggaatgccttccgtcttaatgaaaaatcc-ctttctcacca-tagagcatagcacccaaggtcctccatagtcttaccatta 43422554  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |  ||||  |||||||||||| ||||||||| | |||||||||||||  ||||| ||||||    
T  43422555 ctagtgtgttcaactccacctcaagttgagcgtactctacctcaattagcaaatacgtaca 43422615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 53916660 - 53916819
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| ||||| || |||||||||| || | ||||||| | ||||||||||||||| ||| ||||||||| || ||||||     
T  53916660 atacattcttcaacctccggaatgtcttccatcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagccgtaccatta 53916758  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||| |||  |||||||||||| | | ||||| | ||||| ||||| |  ||||||||||||    
T  53916759 ccgatgtgttcaactccacctcacgctgagcgtactctaactcaactagcaaatgcgtaca 53916819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 514
Target Start/End: Complemental strand, 27422233 - 27422093
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcc 464  Q
    |||||||||| ||| ||  |||||||||||||| || |||||||||| | |||||||||||| |||||||          ||||||||| |  ||||||     
T  27422233 atacattctttaaactctagaatgccttccgtcttcttgaagaattctcttgctcacaactaaagcatagt---------ctccatagttgttccattct 27422143  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttcca 514  Q
    | ||| |||||||||||||||||| ||||||||||||| ||||| |||||    
T  27422142 cagtgccatcaactccaccttaagctgagctttctctagctcaacttcca 27422093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 524
Target Start/End: Original strand, 4309224 - 4309351
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | |||||||||||||||| || ||| |||||| | |||||| |||||||  |||||||||||| | |||||||     
T  4309224 cctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagttgtaccattaccggtgtgttcaactccacctcacgttgagcg 4309322  T
Q  496 ttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||||||||| |  ||||||||||||    
T  4309323 tactctacctcaactagcaaatgcgtaca 4309351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 1619530 - 1619601
Alignment:
Q  384 gaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcg 455  Q
    |||||||||| ||| ||||||||||||| | || |||| |||||||||||||||||| || |||||||||||    
T  1619530 gaatgccttctgtcttcatgaagaattcccttggtcaccactagagcatagcacccaaggtctccatagtcg 1619601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 508
Target Start/End: Complemental strand, 457445 - 457337
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  457445 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 457347  T
Q  499 tctacctcaa 508  Q
    ||||||||||    
T  457346 tctacctcaa 457337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 397 - 524
Target Start/End: Complemental strand, 5898953 - 5898826
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | ||||||||||||| || || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||      
T  5898953 cctcatgaagaaatcccttgctcacca-tagagcatagcacacaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagtg 5898855  T
Q  496 ttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||||||||| |  ||||||||||||    
T  5898854 tactctacctcaactagcaaatgcgtaca 5898826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 6064538 - 6064638
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || ||| |||||||| |||||| || ||||  |||||||||||| | | ||||| | ||||||||||| |  |||||||||||    
T  6064538 tagagcatagcacccaaggtccttcatagtcgtaccattaccagtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtac 6064637  T
Q  524 a 524  Q
    |    
T  6064638 a 6064638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 524
Target Start/End: Original strand, 1619605 - 1619652
Alignment:
Q  477 ctccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||| ||| ||| ||||||||||||||| |||||||||||||||    
T  1619605 ctccacctcaagctgaactttctctacctcaacttccaaatgcgtaca 1619652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 365 - 408
Target Start/End: Original strand, 35918884 - 35918927
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaa 408  Q
    |||||||||||||  |||||||||||||||||| ||||||||||    
T  35918884 atacattcttcaacctccggaatgccttccgtcttcatgaagaa 35918927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 484
Target Start/End: Complemental strand, 25635045 - 25634983
Alignment:
Q  423 actagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccacct 484  Q
    |||||||||||||||||| || |||||||||||| |||||| ||| |||  ||||||||||||    
T  25635045 actagagcatagcacccaaggtcctccatagtcgtaccatttccgctgtgttcaactccacct 25634983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 524
Target Start/End: Complemental strand, 42991512 - 42991412
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||| | || ||| |||||| | |||||| |||||||  |||||||||||| | | ||||| | ||||||||||| |  |||||||||||    
T  42991512 tagagcatagcacctaaggtccttcatagttgtaccattaccggtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtac 42991413  T
Q  524 a 524  Q
    |    
T  42991412 a 42991412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 508
Target Start/End: Complemental strand, 43227621 - 43227510
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccagggcctc-catagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | |||||||||||||||| || ||  |||||||| |||||| |||||||  ||||||| |||| | | |||||     
T  43227621 cctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtctttcatagtcgtaccattaccggtgtgttcaactctacctcacgctgagcg 43227523  T
Q  496 ttctctacctcaa 508  Q
    | |||||||||||    
T  43227522 tactctacctcaa 43227510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 4e-61; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 352 - 534
Target Start/End: Complemental strand, 48490983 - 48490800
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccat 450  Q
    ||||||| || ||||||||||||||||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||||    
T  48490983 cacaagccacatcatacattcttcaaacctcggaatgccttccgtcctcatgaagaatttacatgctcacaactagagcataaacacccaaggcctccat 48490884  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    ||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  48490883 agttgtaccattcccggtgtcatctactccacctcaagttgagctttctctacctcaacttccaaatgcgtacacacactatgc 48490800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 364 - 534
Target Start/End: Original strand, 47674740 - 47674910
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||||| | |||||||    
T  47674740 catacattcttcaaaccctggaatgtcttccgtcctcatgaagaattcacatgctcacaactagagcatatcactcaaggccaccatagttgtaccattc 47674839  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  47674840 caggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgcgtacacacactatgc 47674910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 364 - 524
Target Start/End: Original strand, 6593133 - 6593294
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||  || |||||||||||||||||| |||||||||||||||||||||||  | ||||  |||||||||  || ||||||    
T  6593133 catacattcttcaaaccccggaagaccatccgtcctcatgaagaatccacatgctcacaactagagcataaactcccaaagcctccataaccgtaccatt 6593232  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  6593233 cccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgcgtaca 6593294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 364 - 524
Target Start/End: Original strand, 18390767 - 18390932
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgc----tcacaactagagcatag-cacccagggcctccatagtcgaac 458  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||||||||    ||||||||||||||||  | ||||  |||||||||| || ||    
T  18390767 catacattcttcaaaccccggaataccatccgtcctcatgaagaattcacatgcatgctcacaactagagcataaactcccaaagcctccatagccgtac 18390866  T
Q  459 cattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  18390867 cattcccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgcgtaca 18390932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 364 - 527
Target Start/End: Complemental strand, 26214353 - 26214190
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    ||||||||||||||| | ||||||| |||||||| || |||||||||| | |||||||||||||||  ||||||||| || ||||||||||| | | |||    
T  26214353 catacattcttcaaactacggaatgtcttccgtcttcttgaagaattcccttgctcacaactagagtctagcacccaaggtctccatagtcgtatcgttc 26214254  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacac 527  Q
    |  |||||| ||||||||||| ||| |||||||| |||||||||| ||||||||||||||||||    
T  26214253 ctagtgtcaccaactccacctcaagctgagctttatctacctcaacttccaaatgcgtacacac 26214190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 366 - 524
Target Start/End: Complemental strand, 44726221 - 44726062
Alignment:
Q  366 tacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattcc 464  Q
    ||||||||||||  ||||||||||||||| || |||||||||| || | ||||||| ||||||||||| ||||| ||| |||||||||||| |||||| |    
T  44726221 tacattcttcaacctccggaatgccttccatcttcatgaagaaatcccttgctcaccactagagcataacacccaaggtcctccatagtcgtaccattac 44726122  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  44726121 cggtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 44726062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 368 - 517
Target Start/End: Complemental strand, 6048110 - 6047962
Alignment:
Q  368 cattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccgg 467  Q
    |||||||||||  ||| |||||||| ||||||| |||||||||  | |||||||||||||||| ||||||||| || | ||||||| | ||||||| ||     
T  6048110 cattcttcaaaccccgaaatgcctttcgtcctcttgaagaatttccttgctcacaactagagcctagcacccaaggtc-ccatagttgtaccattctcga 6048012  T
Q  468 tgtcatcaactccaccttaagttgagctttctctacctcaatttccaaat 517  Q
    ||||||||||||||||| ||| |||  |||||||||||||| ||||||||    
T  6048011 tgtcatcaactccacctcaagctgacatttctctacctcaacttccaaat 6047962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 38395587 - 38395428
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||||| ||||||     
T  38395587 atacattcttcaacctccggaatgccttccgtcttcatgaagaaatcgcttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccatta 38395489  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| | | ||||| | | ||||||||| |  ||||||||||||    
T  38395488 ccggtgtgttcaactccacctcacgctgagcgtaccctacctcaactagcaaatgcgtaca 38395428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 499
Target Start/End: Original strand, 44011484 - 44011632
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccat 450  Q
    ||||||| | || |||||||||||||  |||||||| |||||| || ||||||||||||| | |||||||||||| |||||||||||| |||  ||||||    
T  44011484 cacaagccatgttatacattcttcaacctccggaataccttccatcttcatgaagaattcccttgctcacaactacagcatagcacccaaggttctccat 44011583  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttct 499  Q
    ||||| |||||| |||||||  || ||||||||| |||  |||||||||    
T  44011584 agtcgtaccatttccggtgtgttcgactccacctcaagcagagctttct 44011632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 455
Target Start/End: Original strand, 4509843 - 4509935
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcg 455  Q
    |||||||||||| ||  ||| ||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| | |||||| |||||||    
T  4509843 catacattcttccaaccccgaaatgccttctgtcttcatgaagaattcacatgctcacaactagaacataagcacctaaggcctcaatagtcg 4509935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 364 - 455
Target Start/End: Original strand, 4511685 - 4511777
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcg 455  Q
    |||||||||||| ||  ||| ||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||| | |||||| |||||||    
T  4511685 catacattcttccaaccccgaaatgccttctgtcttcatgaagaattcacatgctcacaactagaacataagcacctaaggcctcaatagtcg 4511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 24749889 - 24749770
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagca-cccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| | |||||||| || | ||||||| | |||||||||||| || ||| ||||||||| || ||||||     
T  24749889 atacattcttcaacctccggaatgccttccgtctttatgaagaaatctcttgctcacca-tagagcatagcatccaaggtcctccatagacgtaccatta 24749791  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  ||||||||||||    
T  24749790 ccggtgtgttcaactccacct 24749770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 508
Target Start/End: Original strand, 24816014 - 24816157
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||| ||| |||||| || ||||||||||| | | ||||||| ||||||||||||||||| ||| || || |||||| |||||||    
T  24816014 atacattcttcaacctccgaaataccttccttcttcatgaagaatcc-cttgctcaccactagagcatagcacccgaggtccaccgtagtcgtaccattc 24816112  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
     ||||||  |||||||||||| ||| ||||| | |||||| ||||    
T  24816113 tcggtgtgttcaactccacctcaagctgagcgtactctacttcaa 24816157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 7093180 - 7093305
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | ||||||| |     
T  7093180 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgttgagcgta 7093278  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  7093279 ctctacctcaactagcaaatgcgtaca 7093305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 28486833 - 28486708
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || |||||||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  28486833 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 28486735  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  28486734 ctctacctcaactagcaaatgcgtaca 28486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 22136372 - 22136248
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  22136372 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 22136274  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  22136273 tctacctcaactagcaaatgcgtaca 22136248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 40551399 - 40551275
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  40551399 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 40551301  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  40551300 tctacctcaactagcaaatgcgtaca 40551275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 524
Target Start/End: Complemental strand, 20298550 - 20298423
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccagggc-ctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | |||||||||||||||| ||  ||||||||||| |||||| |||||||  |||||||||||| | | |||||     
T  20298550 cctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggttctccatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcg 20298452  T
Q  496 ttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||||||||| |  ||||||||||||    
T  20298451 tactctacctcaactagcaaatgcgtaca 20298423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 1048008 - 1048133
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  1048008 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 1048106  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  1048107 ctctacctcaactagcaaatgcgtaca 1048133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 9679958 - 9679801
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||| ||||| ||||||| ||||||| || || | | ||||| | ||||||||||||||| ||| |||||||||  | ||||||     
T  9679958 atacattcttcaacctccgaaatgcattccgtcttcatgaaaaaatctctttctcacca-tagagcatagcacccaaggtcctccatagcagtaccatta 9679860  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  9679859 ccggtgt--tcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 9679801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 524
Target Start/End: Complemental strand, 43810 - 43683
Alignment:
Q  397 cctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagct 495  Q
    |||||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  ||||||||| || | | |||||     
T  43810 cctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccatctcacgctgagcg 43712  T
Q  496 ttctctacctcaatttccaaatgcgtaca 524  Q
    | ||||||||||| |  ||||||||||||    
T  43711 tactctacctcaactagcaaatgcgtaca 43683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 21679361 - 21679242
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  | ||||||  |||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| ||||||||| || ||||||     
T  21679361 atacattcttcaaccttcggaatatcttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagccgtaccatta 21679263  T
Q  464 ccggtgtcatcaactccacct 484  Q
    | |||||  ||||||||||||    
T  21679262 ctggtgtgttcaactccacct 21679242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 6068019 - 6068080
Alignment:
Q  368 cattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagag 429  Q
    ||||||||||| ||||||||||||||||||    |||||||||| | |||||||||||||||    
T  6068019 cattcttcaaactccggaatgccttccgtctaattgaagaattcccttgctcacaactagag 6068080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 433
Target Start/End: Complemental strand, 6430975 - 6430927
Alignment:
Q  385 aatgccttccgtcctcatgaagaattcacatgctcacaactagagcata 433  Q
    |||| ||||||| |||||||||||||||||||||| | |||||||||||    
T  6430975 aatgtcttccgtgctcatgaagaattcacatgctcgctactagagcata 6430927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 7350372 - 7350495
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| || |||   |||||||||||| | | ||||| | |    
T  7350372 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccagtg-gttcaactccacctcacgctgagcgtac 7350469  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  7350470 tctacctcaactagcaaatgcgtaca 7350495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 364 - 533
Target Start/End: Complemental strand, 13487590 - 13487421
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||   |||||||    
T  13487590 catacattcttcaaaccccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcataacacccaaggcctccatagttataccattc 13487491  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatg 533  Q
     ||||||| |||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| |||||    
T  13487490 tcggtgtcctcaactccaccttaagttgatctttctctacctcaacttccgaatgcgtacacacactatg 13487421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 26174346 - 26174186
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||  | ||||  ||||||||||||  ||||||    
T  26174346 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcacaactagagcataaactcccaaagcctccatagtcataccatt 26174247  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  26174246 cccggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgagtac 26174186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 364 - 526
Target Start/End: Complemental strand, 535301 - 535138
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  |||||||||||||||||| ||||||||||||||||||||| ||||||||||||  |||||| |||||||||||| | ||||||    
T  535301 catacattcttcaaaccccggaatgccttccgtccccatgaagaattcacatgctcataactagagcataaacacccaaggcctccatagttgtaccatt 535202  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacaca 526  Q
    |||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  535201 cccgatatcctcaactccaccttaagttgagctttctctacctcaacttccaaatgcgtacaca 535138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 16408866 - 16408706
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||  ||||||  | ||||||||||  ||||||    
T  16408866 catacattcttcaaaccccggagtaccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaagtctccatagtcataccatt 16408767  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  16408766 cccggtgtcatcaactccaccttaagttgagctttctctacctcaacttccaaatgagtac 16408706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 352 - 519
Target Start/End: Original strand, 42427021 - 42427189
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccat 450  Q
    ||||||| || ||||| ||||||||||  || |||||||||||||| |||||||||||||||||||||||| ||||||||||  |||||| |||||||||    
T  42427021 cacaagccacatcatatattcttcaaaccccagaatgccttccgtcatcatgaagaattcacatgctcacagctagagcataaacacccaaggcctccat 42427120  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgc 519  Q
    ||| | ||||||| |||||||||| ||||||||| |||||||||||||||| |||||| ||||||||||    
T  42427121 agttgtaccattctcggtgtcatccactccacctcaagttgagctttctcttcctcaacttccaaatgc 42427189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 367 - 523
Target Start/End: Complemental strand, 16546005 - 16545848
Alignment:
Q  367 acattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccattccc 465  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||||||||  | ||||  ||| |||||| || |||||||||    
T  16546005 acattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcaccactagagcataaactcccaaagcccccatagccgtaccattccc 16545906  T
Q  466 ggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||    
T  16545905 ggtgtcatcaactccacctcaagttgagctttcgctacctcaacttccaaatgagtac 16545848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 29721941 - 29721779
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac--ccagggcctccatagtcgaaccat 461  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||| |||||||||||||||||||||  ||  |||  ||||||||||||  |||||    
T  29721941 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcgcatgctcacaactagagcataaaactcccaaagcctccatagtcataccat 29721842  T
Q  462 tc-ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |  ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  29721841 tttccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 29721779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 40381684 - 40381524
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||| |||||||||| | | ||||  |||||||||| || | ||||    
T  40381684 catacattcttcaaaccccggaataccttccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaacatt 40381585  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| || | ||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  40381584 cccggagttaccaactccacctcaagttgagctttctctgcctcaacttccaaatgcgtac 40381524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 13295206 - 13295047
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||| |||||| |||| |||| | | ||||||| | ||||  || | |||||||||||||||||||||||||| || ||||||||||| ||||||     
T  13295206 catacatttttcaaactccgaaatgtcgttcgtcctcttaaagagctcccttgctcacaactagagcatagcacccaaggtctccatagtcgtaccattt 13295107  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
      |||||||||| |||||||| ||| ||||||||||||||||||| ||||||||| ||||    
T  13295106 ttggtgtcatcatctccacctcaagctgagctttctctacctcaacttccaaatgagtac 13295047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 27911725 - 27911566
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  ||| |||||||||||||| |||||||||| || | ||||||| | |||||||||||||||| || |||||||||||| ||||||     
T  27911725 atacattcttcaacctccagaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccatta 27911627  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| | | ||||| | |||||||| || |  ||||||||||||    
T  27911626 ccggtgtgttcaactccacctcacgctgagcgtactctaccttaactagcaaatgcgtaca 27911566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 18510400 - 18510519
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||| ||  |||||||||||||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||||| ||||||     
T  18510400 atacattctttaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccatta 18510498  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  ||||||||||||    
T  18510499 ccggtgtgttcaactccacct 18510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 20044264 - 20044134
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||| || | ||||||| ||||||||||||||||| ||| |||||||||||| | ||||     
T  20044264 atacattcttcaacctccggaatgtcttccgtcttcatgaagaaatctcttgctcaccactagagcatagcacccaaggtcctccatagtcgcaacatta 20044165  T
Q  464 ccggtgtcatcaactccaccttaagttgagctt 496  Q
    | |  ||| |||||||||||| ||| |||||||    
T  20044164 ctg--gtcttcaactccacctcaagctgagctt 20044134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 23666606 - 23666482
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  23666606 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 23666508  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  23666507 tctacctcaactagcaaatgcgtaca 23666482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 34478139 - 34478263
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  34478139 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 34478237  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  34478238 tctacctcaactagcaaatgcgtaca 34478263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 425 - 524
Target Start/End: Complemental strand, 6746606 - 6746506
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || |||||||||||| |||||| |||||||  |||||||||||| | | ||||| | ||||||||||| |  |||||||||||    
T  6746606 tagagcatagcacccaaggtcctccatagtcgtaccattaccggtgtgttcaactccacctcacggtgagcatactctacctcaactagcaaatgcgtac 6746507  T
Q  524 a 524  Q
    |    
T  6746506 a 6746506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 15355594 - 15355693
Alignment:
Q  425 tagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  15355594 tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 15355693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 31544293 - 31544168
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  31544293 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 31544195  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  31544194 ctctacctcaactagcaaatgcgtaca 31544168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 505
Target Start/End: Complemental strand, 659311 - 659171
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||| ||||||||||||| |||||||||| || | ||||||  | ||||||| ||||||| ||| ||| |||||||| ||||||     
T  659311 atacattcttcaacctccgaaatgccttccgtcttcatgaagaaatcccttgctcatca-tagagcaaagcacccaaggtccttcatagtcgtaccatta 659213  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacct 505  Q
    || ||||  |||||||||||| | | ||||| | ||||||||    
T  659212 ccagtgtgttcaactccacctcacgctgagcgtactctacct 659171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 10756453 - 10756329
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| ||||||   |||||||||||| | | ||||| | |    
T  10756453 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgagttcaactccacctcacgctgagcatac 10756355  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  10756354 tctacctcaactagcaaatgcgtaca 10756329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 20504853 - 20504972
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagca-cccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||| ||||||||||||| ||||||| || || | ||||||| | ||||||||| || || ||| ||||||||| || ||||||     
T  20504853 atacattcttcaacctccgtaatgccttccgtcttcatgaacaaatcccttgctcacca-tagagcataacatccaaggtcctccatagccgtaccatta 20504951  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  || |||||||||    
T  20504952 ccggtgtgttccactccacct 20504972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 31466896 - 31467015
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagc-acccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  || | |||| |||||||| |||||||||| || | ||||||| | ||||||||||| ||| ||| |||||||||||| ||||||     
T  31466896 atacattcttcaacctctgaaatgtcttccgtcttcatgaagaaatctcttgctcacca-tagagcatagcaaccaaggtcctccatagtcgtaccatta 31466994  T
Q  464 ccggtgtcatcaactccacct 484  Q
     ||||||  | ||||||||||    
T  31466995 tcggtgtgtttaactccacct 31467015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 421
Target Start/End: Original strand, 41586994 - 41587049
Alignment:
Q  366 tacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcac 421  Q
    ||||||||||||  |||||||||||||||||| |||||||||| || | |||||||    
T  41586994 tacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcac 41587049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 425 - 524
Target Start/End: Complemental strand, 18468257 - 18468157
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || ||||||||| ||  ||||| |||||||  |||||||||||| | | ||||| | ||||||||||  |  |||||||||||    
T  18468257 tagagcatagcacccaaggtcctccatagccgtgccattaccggtgtgttcaactccacctcacgctgagcgtactctacctcagctagcaaatgcgtac 18468158  T
Q  524 a 524  Q
    |    
T  18468157 a 18468157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 364 - 523
Target Start/End: Original strand, 34255107 - 34255267
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||| ||||||    
T  34255107 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaggcctccatagtcgtaccatt 34255206  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  34255207 cccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 34255267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 364 - 534
Target Start/End: Complemental strand, 4733197 - 4733026
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  | |||||| ||| | ||||||||||| |||||||||| |||||||||||||||  |||||| | |||||||||||| ||||||    
T  4733197 catacattcttcaaacccgggaatgactttcatcctcatgaagcattcacatgcacacaactagagcataaacacccaagacctccatagtcgtaccatt 4733098  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
      |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  4733097 ttcggtgtcatcaactccacctcaagttgagatttctctacctcaatttccaaatgcgtacacacactatgc 4733026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 364 - 500
Target Start/End: Original strand, 41365617 - 41365756
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctc---atgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaacca 460  Q
    ||||||||||||||| || |||||| |||||||| ||   ||||||||||| |||||||||||||||||||||||||||| |||||||||||||  ||||    
T  41365617 catacattcttcaaactctggaatgtcttccgtcttcttcatgaagaattcccatgctcacaactagagcatagcacccaaggcctccatagtcatacca 41365716  T
Q  461 ttcccggtgtcatcaactccaccttaagttgagctttctc 500  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  41365717 ttcccggtgtcatcaactccacctcaagttgagctttctc 41365756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 31574552 - 31574711
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcc 464  Q
    |||||||||||||| | |||||||||||| ||| ||||||||||||| | | |||| ||||||||||||||||||| || ||||||||||| | ||||||    
T  31574552 atacattcttcaaacttcggaatgccttctgtcttcatgaagaattccctttctcataactagagcatagcacccaaggtctccatagtcgtatcattcc 31574651  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    || |||||| |||||||||| ||||||||||||||||||||||| |  ||||||||||||    
T  31574652 cgatgtcataaactccacctcaagttgagctttctctacctcaactagcaaatgcgtaca 31574711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 362 - 508
Target Start/End: Complemental strand, 17849237 - 17849091
Alignment:
Q  362 gtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccat 461  Q
    ||||||||||||||||| |||| ||||||||||||| |  |||||||||| | |||| ||||||||||| ||||||||| || ||||||||||  ||  |    
T  17849237 gtcatacattcttcaaaatccgaaatgccttccgtctttttgaagaattctcttgctaacaactagagcctagcacccaaggtctccatagtcatacttt 17849138  T
Q  462 tcccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
      ||  ||||||||||||||||| ||| |||||||||||||||||||    
T  17849137 gtccaatgtcatcaactccacctcaaggtgagctttctctacctcaa 17849091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 362 - 524
Target Start/End: Original strand, 42436228 - 42436377
Alignment:
Q  362 gtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccat 461  Q
    |||||||||||||||||  ||  |||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||             ||||    
T  42436228 gtcatacattcttcaaaccccacaatgcctttcgtcctcatgaagaattcacatgctcacaactagagcataacacccaaggc-------------ccat 42436314  T
Q  462 tcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    || | |||||||||||||||||| || | |||||||||||||||||| || ||||||||||||    
T  42436315 tctctgtgtcatcaactccacctcaaatcgagctttctctacctcaactttcaaatgcgtaca 42436377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 41384000 - 41383857
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagca-cccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || | ||||||| | |||||||||||| || ||| ||||||||| || ||||||     
T  41384000 atacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcatccaaggtcctccatagccgtaccatta 41383902  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  |||||||||||| ||| ||||| | |||||||||||    
T  41383901 ccggtgtgttcaactccacctcaagatgagcgtactctacctcaa 41383857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 453
Target Start/End: Original strand, 40220628 - 40220729
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccata 451  Q
    ||||||| | ||||| ||||||||||   ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  40220628 cacaagccatgtcattcattcttcaacccccgaaatgcctttcgtactcttgaagaattcacatgctcacaactagagcataacacccaaggcctccata 40220727  T
Q  452 gt 453  Q
    ||    
T  40220728 gt 40220729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 15072105 - 15071948
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac-ccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||   ||||||||||||||||| |||||||||| || | ||||||| | ||||||||||||| | ||| | ||||| |||| ||||||     
T  15072105 atacattcttcaac--ccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcactcaaggtcttccattgtcgtaccatta 15072009  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    || ||||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  15072008 ccagtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 15071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 18812322 - 18812198
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  18812322 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 18812224  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  18812223 tctacctcaactagcaaatgcgtaca 18812198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 43081216 - 43081092
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  43081216 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 43081118  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |   |||||||||||    
T  43081117 tctacctcaactagtaaatgcgtaca 43081092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 392 - 496
Target Start/End: Complemental strand, 21481818 - 21481713
Alignment:
Q  392 tccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcct-ccatagtcgaaccattcccggtgtcatcaactccaccttaagtt 490  Q
    |||||| |||||||||| ||   ||||||| ||||||||||||| |||| || || ||||||||| |||||| ||| |||  |||| ||||||| |||||    
T  21481818 tccgtcttcatgaagaaatccattgctcaccactagagcatagctcccaaggtcttccatagtcgtaccatttccgatgtgttcaaatccacctcaagtt 21481719  T
Q  491 gagctt 496  Q
    ||||||    
T  21481718 gagctt 21481713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 524
Target Start/End: Complemental strand, 27828575 - 27828475
Alignment:
Q  425 tagagcatagcacccagggc-ctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| ||  || |||||||| |||||| |||||||  |||||||||||| | | ||||| | ||||||||||| |  |||||||||||    
T  27828575 tagagcatagcacccaaggttcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtac 27828476  T
Q  524 a 524  Q
    |    
T  27828475 a 27828475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 352 - 534
Target Start/End: Complemental strand, 54882161 - 54881979
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccata 451  Q
    ||||||||||  ||||||||||||||   | ||||||||| |||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||    
T  54882161 cacaagcaacaccatacattcttcaaccccgggaatgcctcccgtactcttgaagaattcacatgctcacaactagagcataacacccaaggcctccata 54882062  T
Q  452 gtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    |||| ||||||| ||||||||  |||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  54882061 gtcgtaccattctcggtgtcactaactccacctcaagttgagctttctctacctcaacttccaaatgtgtacacacactatgc 54881979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 364 - 534
Target Start/End: Original strand, 12740334 - 12740505
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||| |||| ||||||||||||||  |||||| |||||||||||| | ||||||    
T  12740334 catacattcttcaaaccccggaatgtcttccgtcctcatgaagaattcacgtgcttacaactagagcataaacacccaaggcctccatagttgtaccatt 12740433  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
     ||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  12740434 tccggtatcatcaactctacctcaagttgagctttctctacctcaacttccaaatgagtacacacactatgc 12740505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 364 - 534
Target Start/End: Original strand, 12748540 - 12748711
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  |||||||| |||||||||||||||||||||||| |||| ||||||||||||||  |||||| |||||||||||| | ||||||    
T  12748540 catacattcttcaaaccccggaatgtcttccgtcctcatgaagaattcacgtgcttacaactagagcataaacacccaaggcctccatagttgtaccatt 12748639  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
     ||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||    
T  12748640 tccggtatcatcaactctacctcaagttgagctttctctacctcaacttccaaatgagtacacacactatgc 12748711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 364 - 533
Target Start/End: Original strand, 34571203 - 34571369
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| | | |||||    
T  34571203 catacagtcttcaaaccccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaaggccttcatagttgtatcattc 34571302  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatg 533  Q
     |||||||| ||||||||||| ||||||||||   | |||||||| ||||||||||||||| || |||||    
T  34571303 tcggtgtcaccaactccacctcaagttgagct---tatacctcaacttccaaatgcgtacatacactatg 34571369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 8394986 - 8394826
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || ||||||||||||||||||||| ||||||||||||||||||||  | ||||  ||||||||||||| ||||||    
T  8394986 catacattcttcaaaccccggaataccatccgtcctcatgaagaattcatatgctcacaactagagcatacactcccaaagcctccatagtcgtaccatt 8394887  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| |||| ||||||||||| ||||||||||||| ||||||||| ||||||||| ||||    
T  8394886 cccggagtcaccaactccacctcaagttgagctttcgctacctcaacttccaaatgagtac 8394826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 364 - 524
Target Start/End: Complemental strand, 7124276 - 7124115
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||  | ||||  ||||||| || || ||||||    
T  7124276 catacattcttcaaaccccggaataccttccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccacagccgtaccatt 7124177  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||| || | ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  7124176 cccggagttagcaactccacctcaagttgagctttctctacctcaacttccaaatgcgtaca 7124115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 5137660 - 5137500
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  5137660 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 5137561  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  5137560 cccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 5137500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 352 - 508
Target Start/End: Complemental strand, 36770812 - 36770655
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccat 450  Q
    ||||||| | || |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| |||  ||||||    
T  36770812 cacaagccatgttatacattcttcaacctccggaatgccttccgtcttcatgaagaattcccttgctcacaactagagcatagcacccaaggttctccat 36770713  T
Q  451 agtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    || || ||||||  |||| |  |||||||||||| ||| | ||||| |||||||||||    
T  36770712 agccgtaccattatcggtctgttcaactccacctcaagctaagcttactctacctcaa 36770655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 364 - 524
Target Start/End: Complemental strand, 10114190 - 10114030
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    ||||||||||||||| ||||||||| |||  ||| |||||||||||||   |||||||||||| || ||| |||||| || ||||||||||| |||||||    
T  10114190 catacattcttcaaactccggaatgtcttatgtcttcatgaagaattccattgctcacaactaaagaataacacccaaggtctccatagtcgtaccattc 10114091  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  | |||||||||| ||| ||||| || || ||||||| |   |||||||||||    
T  10114090 ccggtgtgtttaactccacctcaagctgagcgttgtcaacctcaactagaaaatgcgtaca 10114030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 484
Target Start/End: Original strand, 22801758 - 22801877
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||||| ||||||     
T  22801758 atacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccatta 22801856  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  ||||||||||||    
T  22801857 ccggtgtgttcaactccacct 22801877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 524
Target Start/End: Complemental strand, 47564103 - 47563943
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||  ||||||||||||| |||||||||| ||   ||||||| ||||||||||||||||| ||| | |||||||||| ||||||     
T  47564103 atacattcttcaacctccataatgccttccgtcttcatgaagaaatccattgctcaccactagagcatagcacccaaggtcgtccatagtcgtaccatta 47564004  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
     ||||||  |||||||||||| ||| ||||| | ||||||||||| |  ||||||||||||    
T  47564003 tcggtgtgttcaactccacctcaagctgagcgtactctacctcaactagcaaatgcgtaca 47563943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 365 - 484
Target Start/End: Complemental strand, 24879859 - 24879740
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||| ||||||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||||| ||||||     
T  24879859 atacattcttcaacctccggaatgcattccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccatta 24879761  T
Q  464 ccggtgtcatcaactccacct 484  Q
    |||||||  ||||||||||||    
T  24879760 ccggtgtgttcaactccacct 24879740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 521
Target Start/End: Complemental strand, 26559183 - 26559077
Alignment:
Q  415 tgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttcca 514  Q
    |||| ||||||||||| ||||||||| || ||||||||| | ||||||   ||||||||||||||||||||| | |||||||||||||| |||| || ||    
T  26559183 tgctaacaactagagcctagcacccaaggtctccatagttgtaccatttatggtgtcatcaactccaccttacgatgagctttctctacatcaacttgca 26559084  T
Q  515 aatgcgt 521  Q
    |||||||    
T  26559083 aatgcgt 26559077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 36379573 - 36379429
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaa-ttcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccatt 462  Q
    |||||||||||||  || ||||||||||||||  |||||||||| ||||  ||||||| |||||||||||||| ||| || |||||||||||| ||||||    
T  36379573 atacattcttcaatctctggaatgccttccgttttcatgaagaaattcat-tgctcaccactagagcatagcatccaaggtcctccatagtcgtaccatt 36379475  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    ||||||||  | |||||||||| ||  ||||| | |||||||||||    
T  36379474 cccggtgtgtttaactccacctcaaactgagcgtactctacctcaa 36379429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 12401743 - 12401902
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||| ||||| ||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||  | ||||||     
T  12401743 atacattcttcaacctccggaattccttctgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagctgtaccatta 12401841  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||   |||||||||||| ||| ||||| | ||||||||||| |  ||||||||||||    
T  12401842 ccggtgagttcaactccacctcaagctgagcgtactctacctcaactagcaaatgcgtaca 12401902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 16454652 - 16454509
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggc-ctccatagtcgaaccattc 463  Q
    |||||||||||||  ||| |||||||||||||| |||||||||| || | ||||||| | ||| | |||||||||| ||  ||||||||||| ||||||     
T  16454652 atacattcttcaacctccagaatgccttccgtcttcatgaagaaatcccttgctcacca-tagcgtatagcacccaaggtactccatagtcgtaccatta 16454554  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  |||||||||||| ||| ||||| | |||||||||||    
T  16454553 ccggtgtgttcaactccacctcaagctgagcgtactctacctcaa 16454509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 36920519 - 36920678
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||||||||||| |||||||||| || | ||||||| | |||||||| |||||| ||| |||||||||||| ||||||     
T  36920519 atacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcacca-tagagcattgcacccaaggtcctccatagtcgtaccatta 36920617  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||| | ||||| | | ||| | | ||||||||||| |  ||||||||||||    
T  36920618 ccggtgtgttcaaatgcacctcacgctgaacgtactctacctcaactagcaaatgcgtaca 36920678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 396 - 524
Target Start/End: Original strand, 22133298 - 22133426
Alignment:
Q  396 tcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagc 494  Q
    ||||||||||||| || | ||||||| | |||||||||||||||| || |||||||||||| |||||| |||||||  |||||||||||| | | |||||    
T  22133298 tcctcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtaccattaccggtgtgttcaactccacctcacgctgagc 22133396  T
Q  495 tttctctacctcaatttccaaatgcgtaca 524  Q
     | ||||||||||| |  ||||||||||||    
T  22133397 gtactctacctcaactagcaaatgcgtaca 22133426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 508
Target Start/End: Original strand, 14788419 - 14788562
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||| |||||||||| || ||||||| || | ||||||| | ||||||||||||||| | | ||||||||| || ||||||     
T  14788419 atacattcttcaacctccggaacgccttccgtcttcgtgaagaaatcccttgctcacca-tagagcatagcacccaacgtcctccatagccgtaccatta 14788517  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  |||||||||||| | | ||||| | |||||||||||    
T  14788518 ccggtgtgttcaactccacctcacgctgagcgtactctacctcaa 14788562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 5100164 - 5100023
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| |||| ||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||||| || |||     
T  5100164 atacattcttcaacctccggaatgtcttctgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatagtcgtactatta 5100066  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  | |||||||||| | | ||||| | |||||||||||    
T  5100065 ccggtgt--ttaactccacctcacgctgagcgtactctacctcaa 5100023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 497
Target Start/End: Original strand, 18535877 - 18535960
Alignment:
Q  415 tgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    ||||||| |||||||||||||||||| || |||||||||||| |||||||| |||||  | |||||||||| ||| ||||||||    
T  18535877 tgctcaccactagagcatagcacccaaggtcctccatagtcgtaccattcctggtgtgttaaactccacctcaagctgagcttt 18535960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 365 - 469
Target Start/End: Complemental strand, 47565955 - 47565851
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac-ccagggcctccatagtcgaaccattc 463  Q
    |||||| ||||||  ||| |||||||||||||| ||||||||||||| | ||||||||| ||||||||| ||| | |||  ||||||||||  |||||||    
T  47565955 atacatccttcaacctccagaatgccttccgtcttcatgaagaattcccttgctcacaa-tagagcatatcactcaaggttctccatagtcataccattc 47565857  T
Q  464 ccggtg 469  Q
    ||||||    
T  47565856 ccggtg 47565851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 9175217 - 9175317
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||| ||||| || ||| |||||||| |||||| |||||||  |||||||||||| | ||||||| | ||||||||||| |  |||||||||||    
T  9175217 tagagcatagtacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgttgagcgtactctacctcaactagcaaatgcgtac 9175316  T
Q  524 a 524  Q
    |    
T  9175317 a 9175317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 11007288 - 11007412
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| ||  | |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  11007288 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggttttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 11007386  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |   |||||||||||    
T  11007387 tctacctcaactagaaaatgcgtaca 11007412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 16932868 - 16932992
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| ||  | |||||||| |||||| || ||||  |||||||||||| | | ||||| | |    
T  16932868 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggttttcatagtcgtaccattaccagtgtgttcaactccacctcacgctgagcgtac 16932966  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  16932967 tctacctcaactagcaaatgcgtaca 16932992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 399 - 508
Target Start/End: Original strand, 22781457 - 22781565
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| || ||||  |||||||||||| | | ||||| | |    
T  22781457 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccagtgtgttcaactccacctcacgctgagcgtac 22781555  T
Q  499 tctacctcaa 508  Q
    ||||||||||    
T  22781556 tctacctcaa 22781565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 12396801 - 12396888
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatag 452  Q
    |||||||||||||  |||||||| ||||| ||| |||||||||| || | ||||||| | ||||||||||||||| ||| |||||||||    
T  12396801 atacattcttcaacctccggaattccttctgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccatag 12396888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 362 - 462
Target Start/End: Original strand, 35371522 - 35371622
Alignment:
Q  362 gtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccat 461  Q
    |||||||||||||||||| ||  |||  ||| ||| ||  ||||||| || | |||||||||||||||||||| ||||| ||  |||||||||| |||||    
T  35371522 gtcatacattcttcaaatcccaaaatatctttcgttctattgaagaactcccttgctcacaactagagcatagaacccatggtttccatagtcgtaccat 35371621  T
Q  462 t 462  Q
    |    
T  35371622 t 35371622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 22045433 - 22045558
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| ||||| || |||||| |||||||  |||||||||||| | | ||||| |     
T  22045433 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagccgtaccattaccggtgtgttcaactccacctcacgctgagcgta 22045531  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||| ||||| |  ||||||||||||    
T  22045532 ctctatctcaactagcaaatgcgtaca 22045558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 16652506 - 16652346
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||  | ||||  ||||||||||||| ||||||    
T  16652506 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcaccactagaacataaactcccaaagcctccatagtcgtaccatt 16652407  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  16652406 cccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 16652346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 16554244 - 16554084
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||  | ||||  ||||||||||||  ||||||    
T  16554244 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcaccactagaacataaactcccaaagcctccatagtcataccatt 16554145  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  16554144 cccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 16554084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 16630800 - 16630640
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||| |||||| ||||  | ||||  ||||||||||||  ||||||    
T  16630800 catacattcttcaaaccccggaataccttccgtcctcatgaagaattcacatgctcaccactagaacataaactcccaaagcctccatagtcataccatt 16630701  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  16630700 cccggtgtcatcaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 16630640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 364 - 523
Target Start/End: Complemental strand, 34166452 - 34166292
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  ||||||| || |||||||||||||||||| ||||||||||| |||||||||||  | ||||  |||||||||| || ||||||    
T  34166452 catacattcttcaaaccccggaataccatccgtcctcatgaagaatccacatgctcaccactagagcataaactcccaaagcctccatagccgtaccatt 34166353  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||    
T  34166352 tccggagtcaccaactccacctcaagttgagctttctctacctcaacttccaaatgagtac 34166292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 485
Target Start/End: Original strand, 5407725 - 5407847
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||    ||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||| |||||||||||| | ||||||    
T  5407725 catacattcttcaaaccttggaatgccttccgtcctcatgaagagtttacatgctcacaactagagcataaatacccaaggcctccatagttgtaccatt 5407824  T
Q  463 cccggtgtcatcaactccacctt 485  Q
    |||||||||||||||||||||||    
T  5407825 cccggtgtcatcaactccacctt 5407847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 364 - 485
Target Start/End: Original strand, 5412050 - 5412172
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||    ||||||||||||||||||||||||| || ||||||||||||||||||||| |  ||||| |||||||||||| | ||||||    
T  5412050 catacattcttcaaaccttggaatgccttccgtcctcatgaagagtttacatgctcacaactagagcataaatacccaaggcctccatagttgtaccatt 5412149  T
Q  463 cccggtgtcatcaactccacctt 485  Q
    |||||||||||||||||||||||    
T  5412150 cccggtgtcatcaactccacctt 5412172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 413 - 534
Target Start/End: Complemental strand, 16568482 - 16568361
Alignment:
Q  413 catgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttc 512  Q
    ||||||||||||||||||||| | |||| || ||||||||| | |||||||||||||||| ||||||||||| |||||||| |||||||||||||| |||    
T  16568482 catgctcacaactagagcataactcccaaggtctccatagttgtaccattcccggtgtcaccaactccacctcaagttgagatttctctacctcaacttc 16568383  T
Q  513 caaatgcgtacacacgctatgc 534  Q
    |||||  |||||||| ||||||    
T  16568382 caaattagtacacacactatgc 16568361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 485
Target Start/End: Original strand, 5406945 - 5407078
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagc-acccagggcctccat 450  Q
    ||||||| || |||| |||||||||||  ||||||||||||| ||| ||||||||| || |||||||||||||| |||||||   ||||| |||||||||    
T  5406945 cacaagccacatcatgcattcttcaaaccccggaatgccttctgtc-tcatgaagagttaacatgctcacaactggagcataaatacccaaggcctccat 5407043  T
Q  451 agtcgaaccattcccggtgtcatcaactccacctt 485  Q
    ||||| |||||||||||||||||||||||||||||    
T  5407044 agtcgtaccattcccggtgtcatcaactccacctt 5407078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 485
Target Start/End: Original strand, 5411270 - 5411403
Alignment:
Q  352 cacaagcaacgtcatacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagc-acccagggcctccat 450  Q
    ||||||| || |||| |||||||||||  ||||||||||||| ||| ||||||||| || |||||||||||||| |||||||   ||||| |||||||||    
T  5411270 cacaagccacatcatgcattcttcaaaccccggaatgccttctgtc-tcatgaagagttaacatgctcacaactggagcataaatacccaaggcctccat 5411368  T
Q  451 agtcgaaccattcccggtgtcatcaactccacctt 485  Q
    ||||| |||||||||||||||||||||||||||||    
T  5411369 agtcgtaccattcccggtgtcatcaactccacctt 5411403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 364 - 517
Target Start/End: Complemental strand, 30444916 - 30444763
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||||  || |||||||||| |||||| |||||||||| | |||||||||||||||  |||||||||  | ||||||||||| |||| |     
T  30444916 catacattcttcaaacccctgaatgccttctgtcctcttgaagaattctcttgctcacaactagagactagcacccaatgtctccatagtcgtaccacta 30444817  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaat 517  Q
     | | |||||||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  30444816 tcagcgtcatcaactccacctcaagctgacctttctctacctcaagttccaaat 30444763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 364 - 505
Target Start/End: Complemental strand, 11137700 - 11137559
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    ||||||||||| ||| ||  |||||| |||| || || |||||||||| | |||||||||||||||| ||||||||| || |||||| |||| |||||||    
T  11137700 catacattctttaaactctagaatgcattccttcttcttgaagaattctcttgctcacaactagagcctagcacccaaggtctccatcgtcgtaccattc 11137601  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacct 505  Q
    ||| ||||||||||||||||  ||| |||| |||||||||||    
T  11137600 ccgatgtcatcaactccaccacaagctgagttttctctacct 11137559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 365 - 524
Target Start/End: Original strand, 3630929 - 3631088
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||||| |||||||| |||||||||| || | ||||||| | |||||||||||||||| || |||||| ||||  ||||||     
T  3630929 atacattcttcaacctccggaatgtcttccgtcttcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcctccaaagtcataccatta 3631027  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||||||  |||||||||||| ||||||||| | ||||||||||| |  ||||||||||||    
T  3631028 ccggtgtgttcaactccacctcaagttgagcgtactctacctcaactagcaaatgcgtaca 3631088  T

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Target: chr6; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 365 - 508
Target Start/End: Original strand, 15533622 - 15533766
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac-ccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |  ||||||||||||||| |||||||||| || | ||||||| ||||||||||| ||| | ||| |||||||||||| ||||||     
T  15533622 atacattcttcaacctttggaatgccttccgtcttcatgaagaaatcccgtgctcaccactagagcataacactcaaggtcctccatagtcgtaccatta 15533721  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  |||||||||||| ||| ||||| | |||||||||||    
T  15533722 ccggtgtgttcaactccacctcaagctgagcgtactctacctcaa 15533766  T

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Target: chr6; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 369 - 524
Target Start/End: Complemental strand, 3395601 - 3395446
Alignment:
Q  369 attcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccgg 467  Q
    |||||||||  |||||||||||||||||| |||||||||| || | |||| || | |||||||||||||||| || |||||||||||| |||||| ||||    
T  3395601 attcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctaacca-tagagcatagcacccaaggtcctccatagtcgtaccattaccgg 3395503  T
Q  468 tgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    |||  |||||||||||| ||| ||||  | ||||| ||||| |  ||||||||||||    
T  3395502 tgtgttcaactccacctcaagctgagggtactctagctcaactagcaaatgcgtaca 3395446  T

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Target: chr6; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 364 - 499
Target Start/End: Original strand, 24543468 - 24543600
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||| ||||||| ||| |||||||| ||||||| ||||||| || | ||||||||||  |||| ||| ||||| || ||||||||| | ||||||     
T  24543468 catacatttttcaaatcccg-aatgcctttcgtcctcttgaagaactcccttgctcacaac--gagcctagaacccaaggtctccatagttgtaccattt 24543564  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttct 499  Q
    || |||||||||||||||||| ||||||||||||||    
T  24543565 ccagtgtcatcaactccacctcaagttgagctttct 24543600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 365 - 465
Target Start/End: Complemental strand, 26944697 - 26944596
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccattc 463  Q
    |||||||||||||  |||||||||| ||||||| |||||||||| || | ||||||| ||||||||||||| ||| ||| |||||| ||||| |||||||    
T  26944697 atacattcttcaacctccggaatgcattccgtcttcatgaagaaatcccttgctcaccactagagcatagcccccaaggtcctccacagtcgtaccattc 26944598  T
Q  464 cc 465  Q
    ||    
T  26944597 cc 26944596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 478
Target Start/End: Original strand, 10456220 - 10456333
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattc 463  Q
    |||||||||||||| |  |  |||| ||||||| ||| |||||||||| | ||||||||||||||||||| || |||  | ||||||||||| ||||||     
T  10456220 catacattcttcaactcacaaaatgtcttccgttctcttgaagaattcccttgctcacaactagagcataacatccaaagtctccatagtcgtaccatt- 10456318  T
Q  464 ccggtgtcatcaact 478  Q
    |||||||||||||||    
T  10456319 ccggtgtcatcaact 10456333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 399 - 524
Target Start/End: Original strand, 26067117 - 26067241
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||||||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  26067117 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 26067215  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  26067216 tctacctcaactagcaaatgcgtaca 26067241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 365 - 440
Target Start/End: Original strand, 28038652 - 28038727
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccca 440  Q
    |||||||||||||  |||||||||||||||||| ||||||||||| | | | ||||| |||||| |||||||||||    
T  28038652 atacattcttcaacctccggaatgccttccgtcttcatgaagaatccccttcctcaccactagaccatagcaccca 28038727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 33310448 - 33310324
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccagggcctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttc 498  Q
    |||||||||| || | ||||||| | |||||| ||||||||| || || |||||||| |||||| |||||||  |||||||||||| | | ||||| | |    
T  33310448 tcatgaagaaatcccttgctcacca-tagagcctagcacccaaggtcttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtac 33310350  T
Q  499 tctacctcaatttccaaatgcgtaca 524  Q
    |||||||||| |  ||||||||||||    
T  33310349 tctacctcaactagcaaatgcgtaca 33310324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 450
Target Start/End: Complemental strand, 17758881 - 17758814
Alignment:
Q  383 ggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccagggcctccat 450  Q
    |||||||||| | | ||| |||||||||||||| ||||||||||| ||||| |||||| |||||||||    
T  17758881 ggaatgcctttcatactcttgaagaattcacatactcacaactagtgcataacacccaaggcctccat 17758814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 524
Target Start/End: Complemental strand, 22615155 - 22615107
Alignment:
Q  476 actccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||| ||||||||||||| ||||||||  |||||||||||||||    
T  22615155 actccacctcaagttgagctttcactacctcaccttccaaatgcgtaca 22615107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1908 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold1908
Description:

Target: scaffold1908; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 364 - 534
Target Start/End: Complemental strand, 929 - 758
Alignment:
Q  364 catacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatag-cacccagggcctccatagtcgaaccatt 462  Q
    |||||||||||||||  |||||  ||||||||||||||||||||||||||||||||| ||||||||||||  |||||| | |||||||||| | |||| |    
T  929 catacattcttcaaaccccggagcgccttccgtcctcatgaagaattcacatgctcaaaactagagcataaacacccaagacctccatagttgtaccagt 830  T
Q  463 cccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtacacacgctatgc 534  Q
    | |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||    
T  829 ctcggtgtcaacaactccaccttaagttgagctttctctacctcaacttccatatgcgtacacacactatgc 758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 365 - 523
Target Start/End: Original strand, 9519 - 9678
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcat-agcacccagggcctccatagtcgaaccattc 463  Q
    ||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||||  |||||||    
T  9519 atacattcttcaaaccccgaaataccttccgtcctcatgaagaattcacatgctcacaactagagcataaacacccaaagcctccatagtcataccattc 9618  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
     |||||||||||||||||| | ||||||||||||||||||||||| || |||||| ||||    
T  9619 tcggtgtcatcaactccacatcaagttgagctttctctacctcaactttcaaatgagtac 9678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 366 - 524
Target Start/End: Complemental strand, 35187 - 35028
Alignment:
Q  366 tacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcac-ccagggcctccatagtcgaaccattcc 464  Q
    ||||||||||||  |||||||||||||||||| |||||||||| || | ||||||| ||||||||||||||| | ||| |||||||||||| |||||| |    
T  35187 tacattcttcaacctccggaatgccttccgtcttcatgaagaaatcccttgctcaccactagagcatagcactcaaggtcctccatagtcgtaccattac 35088  T
Q  465 cggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtaca 524  Q
    || |||  |||||||||||| | | ||||| | ||||||||||| |  ||||||||||||    
T  35087 cgatgtgttcaactccacctcacgctgagcgtactctacctcaactagcaaatgcgtaca 35028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 365 - 462
Target Start/End: Complemental strand, 4078 - 3980
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcaccc-agggcctccatagtcgaaccatt 462  Q
    |||||||||||||| |  ||||||||||||||| |||||||||| || | ||||||| ||||||||||| ||||| ||| |||||||||||| ||||||    
T  4078 atacattcttcaaactttggaatgccttccgtcttcatgaagaaatcccttgctcaccactagagcatatcacccaaggtcctccatagtcgtaccatt 3980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 508
Target Start/End: Complemental strand, 51311 - 51168
Alignment:
Q  365 atacattcttcaaattccggaatgccttccgtcctcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattc 463  Q
    |||||||||||||  ||||||| |||||||||| || ||||||| || | ||||||| | ||||||||||||||||  | ||||||||| || ||||||     
T  51311 atacattcttcaacctccggaacgccttccgtcttcgtgaagaaatcccttgctcacca-tagagcatagcacccaacgtcctccatagccgtaccatta 51213  T
Q  464 ccggtgtcatcaactccaccttaagttgagctttctctacctcaa 508  Q
    |||||||  |||||||||||| | | ||||| | |||||||||||    
T  51212 ccggtgtgttcaactccacctcacgctgagcgtactctacctcaa 51168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 1184 - 1059
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  1184 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgta 1086  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    |||||||||||||  |||||| |||||    
T  1085 ctctacctcaattagcaaatgtgtaca 1059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 524
Target Start/End: Complemental strand, 23687 - 23562
Alignment:
Q  399 tcatgaagaattcacatgctcacaactagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagcttt 497  Q
    |||||||||| || | ||||||| | |||||||||||||||| || ||| |||||||| |||||| |||||||  |||||||||||| | | ||||| |     
T  23687 tcatgaagaaatcccttgctcacca-tagagcatagcacccaaggtccttcatagtcgtaccattaccggtgtgttcaactccacctcacgctgagcgtg 23589  T
Q  498 ctctacctcaatttccaaatgcgtaca 524  Q
    ||||||||||| |  ||||||||||||    
T  23588 ctctacctcaactagcaaatgcgtaca 23562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 532 - 632
Alignment:
Q  425 tagagcatagcacccaggg-cctccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || ||| |||||| | |||||| |||||||  |||||||||||| | ||||||| | ||||||||||| |  |||||||||||    
T  532 tagagcatagcacccaaggtccttcatagttgtaccattaccggtgtgttcaactccacctcacgttgagcgtactctacctcaactagcaaatgcgtac 631  T
Q  524 a 524  Q
    |    
T  632 a 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 524
Target Start/End: Original strand, 70272 - 70372
Alignment:
Q  425 tagagcatagcacccagggcct-ccatagtcgaaccattcccggtgtcatcaactccaccttaagttgagctttctctacctcaatttccaaatgcgtac 523  Q
    |||||||||||||||| || || ||||||||| |||||| || ||||  |||||||||||| | | ||||| | ||||||||||| |  |||||||||||    
T  70272 tagagcatagcacccaaggtcttccatagtcgtaccattaccagtgtgttcaactccacctcacgatgagcgtactctacctcaactagcaaatgcgtac 70371  T
Q  524 a 524  Q
    |    
T  70372 a 70372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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