View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_5 (Length: 507)
Name: NF12182_low_5
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Original strand, 6283846 - 6284324
Alignment:
| Q |
12 |
agcagagaaggataggtttttccaataacacctccattgattatagatagaggaagggggtactatagttccagaaacacctggaggaaatgtggaggga |
111 |
Q |
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| T |
6283846 |
agcagagaaggataggtttttccaataacaccgccattaattatagatagaggaagggggtacgatagttctggaaacacctggaggaaatgtggaggga |
6283945 |
T |
|
| Q |
112 |
gagtatgtaggaaatagttggatgcggtagggatttttcgttgacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagtc |
211 |
Q |
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| T |
6283946 |
gagtaggtaggaaatagttggatgcagtagggatttttcgcttacaaaggaatgacaaaatttattttaatatagaggatgaaacaatacttaagaagtc |
6284045 |
T |
|
| Q |
212 |
ggtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttgggga |
311 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||||| |
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| T |
6284046 |
ggtagaacttgaagaagttgatgagttgaataaaggaagaaaggagaaagcaagcagtggtcaatgattgtattgatttataatgtgagaagcttgggga |
6284145 |
T |
|
| Q |
312 |
agatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggttgatatctttcgtgtgggagggttttttcggggtgtgcttggtgtgaggattc |
411 |
Q |
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| T |
6284146 |
agatcgaaaaggaaaatgattaactagttggtgcgccaacaaaaggttgatatctttcgcgtgggagggttttgtcggggtgtgcttggagtgaggattc |
6284245 |
T |
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| Q |
412 |
ttttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatctttt |
490 |
Q |
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| T |
6284246 |
ttttaaaaatgttcttttgccattatatctattccaaatatgatataattgcaaagaggagattctgtgagaatctttt |
6284324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 213 - 358
Target Start/End: Original strand, 6305577 - 6305719
Alignment:
| Q |
213 |
gtagaacatgaaaaagttgatgagttgaataaaggaagaagggagaaagcaagcagtggtaaataattgtgttgatttataatgtgagaggcttggggaa |
312 |
Q |
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|||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||| |||||||||||| | | |
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| T |
6305577 |
gtagaacatgaagaagcagatgtgttgaataaaggaagaagggagaaagcaactagtgatcaatgattgtgttgatttataa--tgagaggcttggag-a |
6305673 |
T |
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| Q |
313 |
gatcgaaaaggaaaacgattaactagttggtgcgccaacaaaaggt |
358 |
Q |
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| T |
6305674 |
gatcgaaaaggaaaatgattaactagttggtgcgccaaaaaaaggt |
6305719 |
T |
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