View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_6 (Length: 490)
Name: NF12182_low_6
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 9 - 473
Target Start/End: Complemental strand, 30969232 - 30968776
Alignment:
| Q |
9 |
cagcacagattggaaacattttactgggtagaagatcactttgaggacaatatttatataagtctgtaagggtagtttttcgttgcatttaagcttggaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30969232 |
cagcacagattggaaacattttactgggtagaagatcactttgaggacaatatttatataagtctgtaagggtagtttttcgttgcatttaagcttggaa |
30969133 |
T |
|
| Q |
109 |
tgcaggtgtgtaaaagttgcaaggaacatggcttcttacttgggttgataaaaaccctatttgctaatcagagtctgggacatgttcaatatcagagtga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30969132 |
tgcaggtgtgtaaaagttgcaaggaacatggcttcttacttgggttgataaaaaccctatttgctaatcagagtctgggacatgttcaatatcagagtga |
30969033 |
T |
|
| Q |
209 |
aactttaaatagacaaaaagtgactctgtctctagtgtaagtgtaaaccagtattctcaaatagcggctattgcctggtggaagttaaataaattgataa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30969032 |
aactttaaatagacaaaaagtgactctgtctctagtgtaagtgtaaaccagtattctcaaatagcggctattgcctggtggaaattaaataaattgataa |
30968933 |
T |
|
| Q |
309 |
ttttccgttatacactatttagtataaagtgttgttaaacagtagctagggcggcgctatagcagtgtagcatagtgaaattcgaacaaagcactgtttt |
408 |
Q |
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| T |
30968932 |
ttttccgtgatacactatttagtataaagtgttgttaaatagtagctagggcggcgctat--------agcatagtgaaattcgaacaaagcactgtttt |
30968841 |
T |
|
| Q |
409 |
ccactatctgcaattgacaaaactggtataaactgtaccgagcagttgttatagctttaagaaat |
473 |
Q |
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| T |
30968840 |
ccactatctgcaattgacaaaactggtataaactgtaccgagcagtagttatagctttaagaaat |
30968776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 323 - 428
Target Start/End: Original strand, 32888969 - 32889074
Alignment:
| Q |
323 |
ctatttagtataaagtgttgttaaacagtagctagggcggcgctatagcagtgtagcatagtgaaattcgaacaaagcactgttttccactatctgcaat |
422 |
Q |
| |
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|||||||||| ||||| |||| ||| ||| |||| ||||||||||| | |||||||||||| |||| |||||| ||| |||||| ||||||||| | |
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| T |
32888969 |
ctatttagtacaaagtattgtcaaatagtggctattgcggcgctataactctgtagcatagtggaatttgaacaagccacaattttccgctatctgcagt |
32889068 |
T |
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| Q |
423 |
tgacaa |
428 |
Q |
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|||||| |
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| T |
32889069 |
tgacaa |
32889074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 437
Target Start/End: Complemental strand, 7210632 - 7210560
Alignment:
| Q |
365 |
ctatagcagtgtagcatagtgaaattcgaacaaagcactgttttccactatctgcaattgacaaaactggtat |
437 |
Q |
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|||||||| ||| || |||||||||| || |||| |||| |||||||| ||||||||||||||| || ||||| |
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| T |
7210632 |
ctatagcattgttgcgtagtgaaatttgagcaaaccactattttccacaatctgcaattgacaacacgggtat |
7210560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 398
Target Start/End: Original strand, 34417855 - 34417930
Alignment:
| Q |
323 |
ctatttagtataaagtgttgttaaacagtagctagggcggcgctatagcagtgtagcatagtgaaattcgaacaaa |
398 |
Q |
| |
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|||||||||| |||||||||| ||| || |||| |||| |||||| || |||||||||| |||||||||||||| |
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| T |
34417855 |
ctatttagtacaaagtgttgtcaaatagccgctattgcggtgctatatcattgtagcatagcgaaattcgaacaaa |
34417930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 409
Target Start/End: Complemental strand, 34786664 - 34786618
Alignment:
| Q |
363 |
cgctatagcagtgtagcatagtgaaattcgaacaaagcactgttttc |
409 |
Q |
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|||||||||| ||||||||||||||||| ||||||| |||| ||||| |
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| T |
34786664 |
cgctatagcattgtagcatagtgaaatttgaacaaaccactattttc |
34786618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 428
Target Start/End: Original strand, 42822654 - 42822723
Alignment:
| Q |
359 |
gcggcgctatagcagtgtagcatagtgaaattcgaacaaagcactgttttccactatctgcaattgacaa |
428 |
Q |
| |
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|||||||||||||| ||| |||||||| |||| ||||||| | |||||| ||||||||||||||||| |
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| T |
42822654 |
gcggcgctatagcactgttgcatagtggaatttgaacaaactgatattttccgctatctgcaattgacaa |
42822723 |
T |
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