View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12182_low_9 (Length: 453)
Name: NF12182_low_9
Description: NF12182
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12182_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 86 - 443
Target Start/End: Original strand, 2615226 - 2615575
Alignment:
| Q |
86 |
ggataacatttcagcttttgttatttactatgtttcatcgaggctatctacatcatcttatatataggtgtcagagaaaccttaaatcttactcaccctt |
185 |
Q |
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| T |
2615226 |
ggataacatttcatcttttgttgtttactatgtttcatcgaggctatctacatcatcttatatatagctgtcagagaaaccttaaatcttactcacactt |
2615325 |
T |
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| Q |
186 |
gnnnnnnnnnnnnnnnnn-tcatactctattttgttgcttttccttttcatcacagtactacgttggtatgaatactttttggttgtggtggcaaatgtg |
284 |
Q |
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| T |
2615326 |
gaaaaaaaagaaagaaaaatcatactctatttggttgcttttccttttcatcacagtactacgttggtatgaatactttttggttgtggtggcaaatgtg |
2615425 |
T |
|
| Q |
285 |
tggtggtgatggtgagaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggttt |
384 |
Q |
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| T |
2615426 |
tggtg---------aaaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggttt |
2615516 |
T |
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| Q |
385 |
ttcatggtttttggtttgattggtgccattggtgatggattaatgacccctttgcttct |
443 |
Q |
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| T |
2615517 |
ttcatggtttttggtttgattggtgccattggtgatggactaatgacccctttgcttct |
2615575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 267 - 438
Target Start/End: Complemental strand, 2679982 - 2679814
Alignment:
| Q |
267 |
gttgtggtggcaaatgtgtggtggtgatggtgagaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgct |
366 |
Q |
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| T |
2679982 |
gttgtgattgcaaatgggtggtggtgatc---agaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaggtccattttcatgcatgct |
2679886 |
T |
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| Q |
367 |
gatgttcttgattggtttttcatggtttttggtttgattggtgccattggtgatggattaatgacccctttg |
438 |
Q |
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| T |
2679885 |
gatgttcttgattgttttttcatggcttttggtttgattggtgccattggtgatggactaatgactcctttg |
2679814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 422
Target Start/End: Original strand, 2429285 - 2429421
Alignment:
| Q |
286 |
ggtggtgatggtgagaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttt |
385 |
Q |
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| T |
2429285 |
ggtggtggtgatcagaaaaatgtttccattaatgataagaaaaagaaaaatggttctttcaagtccattttcatgcatgctgatgttcttgattggtttt |
2429384 |
T |
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| Q |
386 |
tcatggtttttggtttgattggtgccattggtgatgg |
422 |
Q |
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| T |
2429385 |
tcatggcttttggtttttttggggctattggtgatgg |
2429421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 2603242 - 2603106
Alignment:
| Q |
286 |
ggtggtgatggtgagaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttt |
385 |
Q |
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||||||| || | ||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |
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| T |
2603242 |
ggtggtggtgatcagaaaaatgtttccattaatgttaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggtttt |
2603143 |
T |
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| Q |
386 |
tcatggtttttggtttgattggtgccattggtgatgg |
422 |
Q |
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| T |
2603142 |
tcatggtttttggtttgattggttccattggtgatgg |
2603106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 299 - 441
Target Start/End: Complemental strand, 2647510 - 2647365
Alignment:
| Q |
299 |
agaaaaatgtttccattaatgataagaa---aaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttttcatggtttt |
395 |
Q |
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||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || || |||| ||| |
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| T |
2647510 |
agaaaaatgtttccattaatgttaagaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttcttgattgtttcttaatggcttt |
2647411 |
T |
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| Q |
396 |
tggtttgattggtgccattggtgatggattaatgacccctttgctt |
441 |
Q |
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| T |
2647410 |
tggtttgtttggagccattggtgatggaataatgactcctttgctt |
2647365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 286 - 422
Target Start/End: Complemental strand, 2575226 - 2575090
Alignment:
| Q |
286 |
ggtggtgatggtgagaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttt |
385 |
Q |
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||||||| || | |||||||||||| |||| | | ||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| |||||||||| |
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| T |
2575226 |
ggtggtggtgatcagaaaaatgtttacattgttaagaagaaaaagaaaaatggttcttttaagtcaattttcatgcatgcagatgttctagattggtttt |
2575127 |
T |
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| Q |
386 |
tcatggtttttggtttgattggtgccattggtgatgg |
422 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
2575126 |
tcatggtttttggtttgattggttccattggtgatgg |
2575090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 299 - 435
Target Start/End: Original strand, 2445716 - 2445852
Alignment:
| Q |
299 |
agaaaaatgtttccattaatgataagaaaaagaagaatggttctttgaagtccattttcatgcatgctgatgttcttgattggtttttcatggtttttgg |
398 |
Q |
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||||||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
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| T |
2445716 |
agaaaaatgtttctattaatgttaagaaaaagaaaaatggttcttttaagtccattttcatgcatgctgatgttctagactggtttttaatggtttttgg |
2445815 |
T |
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| Q |
399 |
tttgattggtgccattggtgatggattaatgacccct |
435 |
Q |
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| T |
2445816 |
ttcatttggggctattggtgatggcataatgatccct |
2445852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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