View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12183_low_2 (Length: 636)
Name: NF12183_low_2
Description: NF12183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12183_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 18 - 628
Target Start/End: Complemental strand, 51740968 - 51740358
Alignment:
| Q |
18 |
caattcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatac |
117 |
Q |
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| T |
51740968 |
caattcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatac |
51740869 |
T |
|
| Q |
118 |
tgcccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740868 |
tgcccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataatcatcatcgtca |
51740769 |
T |
|
| Q |
218 |
ctaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740768 |
ctaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgttt |
51740669 |
T |
|
| Q |
318 |
tagatacatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtgg |
417 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740668 |
tagatccatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtgg |
51740569 |
T |
|
| Q |
418 |
ttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctact |
517 |
Q |
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| T |
51740568 |
ttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctact |
51740469 |
T |
|
| Q |
518 |
agcacaatgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagttatcatttaataatacaaatgaaactgcatgaattac |
617 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
51740468 |
agcacaacgttgcaatcttctgcatttaaatcctgtatatacaataataaccaaattaagagtaatcatttaataatacaaatgaaactgcatgaattac |
51740369 |
T |
|
| Q |
618 |
ctacctttgct |
628 |
Q |
| |
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||||||||||| |
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| T |
51740368 |
ctacctttgct |
51740358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 7e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 20 - 521
Target Start/End: Complemental strand, 10201764 - 10201260
Alignment:
| Q |
20 |
attcgttgatgcttgtgaaaaggaagaaggataattgatacttgaagatcttcagcttcattgcaaacatcttcatacaagcttggaaaagatgatactg |
119 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||| || |||||||||| ||| ||||||| || |||| |
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| T |
10201764 |
attcgttgatgcttgtgaaagggaagaagaataatcgatacttgaagattttctgcttcgctgcacacttcttcatacagacttagaaaagaagaaactg |
10201665 |
T |
|
| Q |
120 |
cccttctttggtgaaccaaaatctttgtgtctgcagtgaatgcatctaatgaattattaatttcaacgacgtcattgccaccataa---tcatcatcgtc |
216 |
Q |
| |
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|||| |||| || |||||||||||||||||| ||||||| | ||||| | ||||||||| || || || ||||| |||||| | || ||||| || |
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| T |
10201664 |
tccttttttgttggaccaaaatctttgtgtcttcagtgaaggtatctagggcattattaatgtccaccacatcatttccaccaaaggcttcgtcatcatc |
10201565 |
T |
|
| Q |
217 |
actaaggtcagcattttccttttcatgaaacaataaattggatttgatcttcttcacaagctcaattaggtgcattaaataagtggttgaaggtgatgtt |
316 |
Q |
| |
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|| | || ||||||| |||||||| | || || || || ||||| |||||||||||||| |||| |||||||||||||||||| |||||||||||| |
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| T |
10201564 |
gctgatatcgccattttctttttcatggtataacaagtttgacttgattttcttcacaagctctattaagtgcattaaataagtggtggaaggtgatgtt |
10201465 |
T |
|
| Q |
317 |
ttagatacatgcattgctagtattgttgcaagtattgatgatacttgacgaggatcatatacacaagccaaaattcgaagctcgtcttccatctcttgtg |
416 |
Q |
| |
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||||| |||| |||||||||||||| || ||||| | |||||||| ||||||||||| ||||||||||||||| ||| || |||||||| ||||||| |
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| T |
10201464 |
ttagagccatgtattgctagtattgtggctagtatcgcagatacttgtcgaggatcatacacacaagccaaaattttaagttcatcttccatttcttgtg |
10201365 |
T |
|
| Q |
417 |
gttcaatagctgtatggttatttgagaacattttctcttcccctcttgctagaaaagacacaataattcctgatattattgtgttaagtactattgctac |
516 |
Q |
| |
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||||||| | ||||||||| ||||| ||||||||||||||||| |||||| ||| |||||||| |||||||||||||||||||| | |||||| | ||| |
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| T |
10201364 |
gttcaattgttgtatggttgtttgaaaacattttctcttccccctttgctataaacgacacaattattcctgatattattgtgtttaatactatcgatac |
10201265 |
T |
|
| Q |
517 |
tagca |
521 |
Q |
| |
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||||| |
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|
| T |
10201264 |
tagca |
10201260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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