View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12183_low_3 (Length: 507)
Name: NF12183_low_3
Description: NF12183
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12183_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 8 - 488
Target Start/End: Original strand, 10299293 - 10299773
Alignment:
| Q |
8 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggca |
107 |
Q |
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| T |
10299293 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggca |
10299392 |
T |
|
| Q |
108 |
tggattttttccaccactgctgtggaaacaattagaccttttaattgccctattgattaaagtcacnnnnnnncaccaattaacacaatttaataataac |
207 |
Q |
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| T |
10299393 |
tggattttttccaccactgctgtggaaacaattagaccttttaattgccctattgattaaagtcacaaaaaaacaccaattaacacaatttaataataac |
10299492 |
T |
|
| Q |
208 |
aaatctttaaaatttcattcaactttgtcacaaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299493 |
aaatctttaaaatttcattcaactttgtcacaaactcacatcatgcttatggaagctgctatagtatatccaatagcaacaccaaaaagattagcatatt |
10299592 |
T |
|
| Q |
308 |
gaacaactccacaaatcttgtacttaaagccaccaaggtatgctctaacagcatcagtgtaagtgtagtttcttttcccattgagttgatcaccggtacg |
407 |
Q |
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| T |
10299593 |
gaacaactccacaaatcttgtacttaaagccaccaaggtatgctctaacagcatcagtgtaagtgtagtttcttttgccattgagttgatcaccggtacg |
10299692 |
T |
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| Q |
408 |
gtaacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcatcattgatggtccagcaatccatcc |
488 |
Q |
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| T |
10299693 |
ataacaaacagaaagaagagtggaggtgtagtaagtaacaaacgagaaaagaagcatcattgatggtccagcaatccatcc |
10299773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 40204276 - 40204131
Alignment:
| Q |
13 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
112 |
Q |
| |
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||||||||||||| |||||||| || |||||||||||||| | || | ||| |||||||||||||||||||||||| | ||||||||| ||||||| |
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| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggat |
40204177 |
T |
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| Q |
113 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
158 |
Q |
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| T |
40204176 |
cttttccaccacttctatggaaacaatttgacctttcaattgccct |
40204131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 40208409 - 40208264
Alignment:
| Q |
13 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
112 |
Q |
| |
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| T |
40208409 |
gagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatgtgacatggat |
40208310 |
T |
|
| Q |
113 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
158 |
Q |
| |
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| T |
40208309 |
cttttccaccacttctatggaaacaatttgacctttcaattgccct |
40208264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 40200775 - 40200630
Alignment:
| Q |
13 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
112 |
Q |
| |
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|||||||||||||| |||||||| || |||||||||||||| | || | || |||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatgtgacatggat |
40200676 |
T |
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| Q |
113 |
tttttccaccactgctgtggaaacaattagaccttttaattgccct |
158 |
Q |
| |
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|||||| ||||| || ||||||||||| ||||||| ||||||||| |
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| T |
40200675 |
cttttcccccacttctatggaaacaatttgacctttcaattgccct |
40200630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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