View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12184_high_1 (Length: 463)
Name: NF12184_high_1
Description: NF12184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12184_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 31218495 - 31218952
Alignment:
| Q |
1 |
tatagaaccaggaataatatttgtatcattgtaatataaaggctattcccaataatgaatttagatgacatgaaacaaacaaataaagactaactaatat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31218495 |
tatagaaccaggaataatatttgtatcattgtaatataaaggttattcccaataatcaatttagatgacttgaaacaaacaaataaagactaactaatat |
31218594 |
T |
|
| Q |
101 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccacaacacgcccctgagactaaacttacgtctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218595 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccacaacacgcccctgagactaaacttacgtctga |
31218694 |
T |
|
| Q |
201 |
tgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaacttttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31218695 |
tgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaccttttct |
31218794 |
T |
|
| Q |
301 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218795 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgctt |
31218894 |
T |
|
| Q |
401 |
ccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttg |
458 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
31218895 |
ccttgtaatgtaatcaatagctttctcagtgtgattggactctccactttttcctttg |
31218952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Original strand, 31212740 - 31213197
Alignment:
| Q |
1 |
tatagaaccaggaataatatttgtatcattgtaatataaaggctattcccaataatgaatttagatgacatgaaacaaacaaataaagactaactaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
31212740 |
tatagaaccaggaataatatttgtatcattgtaatataaaggttattcccaataatcaatttagatgacttgaaacaaacaaataaagactaactaatat |
31212839 |
T |
|
| Q |
101 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccacaacacgcccctgagactaaacttacgtctga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31212840 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccacaacacgcccctgagactaaacttacgtctga |
31212939 |
T |
|
| Q |
201 |
tgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaacttttct |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31212940 |
tgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaccttttct |
31213039 |
T |
|
| Q |
301 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31213040 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttcaaacttagaactttgtgcacgtgagcgctt |
31213139 |
T |
|
| Q |
401 |
ccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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|
| T |
31213140 |
ccttgtaatgtaatcaatagctttctcagtgtgaatggaatctccactttttcctttg |
31213197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 47896731 - 47896277
Alignment:
| Q |
1 |
tatagaaccaggaataatatttgtatcattgtaatataaaggctattcccaataatgaatttagatgacatgaaacaaacaaataaagactaactaatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
47896731 |
tatagaaccaggaataatatttgtatcattgtaatataaagtttattcccaataatcaatttagattacttgaaacaaacaaataaagactaactaatat |
47896632 |
T |
|
| Q |
101 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattggctcaccacaacacgcccctgagactaaacttacgtctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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|
| T |
47896631 |
ttcaatttgaagcaaccttcaaaacaaaattaacaatcatgccaatcagttagacaattgtctcaccacaacacgc---tgagactaaacttacgtctga |
47896535 |
T |
|
| Q |
201 |
tgccgtctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaacttttct |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
47896534 |
tgccatctaggtctaagattgtatctgggtggagcccgcctgagattgtatcgcttctcccctgtaaatggggtgggtggagcaactgttgaccttttct |
47896435 |
T |
|
| Q |
301 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896434 |
ttttgcgcgcaccagctgtgataccgtctgaatgtccttcattatcagcagcattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgctt |
47896335 |
T |
|
| Q |
401 |
ccttgtaatgtaatcaatagctttctcagtgtgactagactctccactttttcctttg |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | || |||||||||||||||||| |
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|
| T |
47896334 |
ccttgtaatgtaatcaatagctttctcagtgtgattggattctccactttttcctttg |
47896277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 236 - 443
Target Start/End: Original strand, 4958167 - 4958377
Alignment:
| Q |
236 |
ccgcctgagattgtatcgcttctcccctgtaaatggggt---gggtggagcaactgttgaacttttctttttgcgcgcaccagctgtgataccgtctgaa |
332 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| | | || |||||||||||||||||| |||||||| |||||| |||||||||| || ||||||| |
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|
| T |
4958167 |
ccgcctgaggttgtaacgcttctcccctgtaacttgtgttgtgggtggagcaactgttgaccttttcttcttgcgcccaccagctgttgaactgtctgaa |
4958266 |
T |
|
| Q |
333 |
tgtccttcattatcagcaccattctgctcaccttcttcaatcttagaactttgtgcacgtgagcgcttccttgtaatgtaatcaatagctttctcagtgt |
432 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||| | || ||||||||||||||| |
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| T |
4958267 |
tgtccttcactatcagcagcattctgctcaccttcagcaatcttagaagtttgtgcacgttgtcgcttccttgtactgttaccagtagctttctcagtgt |
4958366 |
T |
|
| Q |
433 |
gactagactct |
443 |
Q |
| |
|
|||| |||||| |
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|
| T |
4958367 |
gactggactct |
4958377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 4957753 - 4957824
Alignment:
| Q |
44 |
tattcccaataatgaatttagatgacatgaaacaaacaaataaagactaactaatatttcaatttgaagcaacctt |
119 |
Q |
| |
|
||||||||| ||| ||||||||| || ||||||| ||||| | |||||||||||||||||||||||||||||| |
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|
| T |
4957753 |
tattcccaagaatcaatttagataacttgaaacatacaaaca----ctaactaatatttcaatttgaagcaacctt |
4957824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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