View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12184_high_4 (Length: 363)
Name: NF12184_high_4
Description: NF12184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12184_high_4 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 43697738 - 43698070
Alignment:
| Q |
1 |
ttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43697738 |
ttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcg |
43697837 |
T |
|
| Q |
101 |
attcctaggtgttggaataggttcttctatcagtttcctggtatgatttactcnnnnnnngacttgaatatgcctattattaagtttaattttgggatga |
200 |
Q |
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| T |
43697838 |
attcctaggtgttggaataggttcttctatcagtttcctggtatgatttactctttttttgacttgaatatgcctattattaagtttaattttgggatga |
43697937 |
T |
|
| Q |
201 |
attgtatagatttgaatgatcacatacatatatacttcctccaattttgaacgtaagaaacaaaagnnnnnnncacatttattaagaaagtaaaataatt |
300 |
Q |
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| T |
43697938 |
attgtatagatttgaatg----------------------ccgattttgaacgtaagaaacaaaagaaaaaaacacatttattaagaaagtaaaataatt |
43698015 |
T |
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| Q |
301 |
gcgtttaagtcattatatacatttaccgacgtccagaaccattcattttcatctc |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43698016 |
gcgtttaagtcattatatacatttaccgacgtccagaaccattcatttccatctc |
43698070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 43712661 - 43712812
Alignment:
| Q |
1 |
ttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
43712661 |
ttcaccttggcatatctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttatcttggtcg |
43712760 |
T |
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| Q |
101 |
attcctaggtgttggaataggttcttctatcagtttcctggtatgatttact |
152 |
Q |
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| T |
43712761 |
cttcttaggtgtcggaataggttcttctatcagtttcctggtatgatttact |
43712812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 43726272 - 43726401
Alignment:
| Q |
16 |
ctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttgg |
115 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||| |||||||| |
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| T |
43726272 |
ctactcagattcttctcttatcctctgcagctagcaatttcacacctgtggttggtgcttttattgcagattcttatctcggtcggttcctcggtgttgg |
43726371 |
T |
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| Q |
116 |
aataggttcttctatcagtttcctggtatg |
145 |
Q |
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| T |
43726372 |
attaggttcatttgtcagcttcctggtatg |
43726401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 43685202 - 43685329
Alignment:
| Q |
16 |
ctactcagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttgg |
115 |
Q |
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|||| ||||||||||| |||||||||||||| | |||||||||||| | ||| |||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
43685202 |
ctacccagatacttctcatatcctctgcagctggaaatttcacacctcttgttgctgcttttattgcagattcttatattggtcgattcctaggtgttgg |
43685301 |
T |
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| Q |
116 |
aataggttcttctatcagtttcctggta |
143 |
Q |
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|||||||||| |||||||||||||||| |
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| T |
43685302 |
aataggttctattatcagtttcctggta |
43685329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 43712847 - 43712904
Alignment:
| Q |
161 |
gacttgaatatgcctattattaagtttaattttggga-tgaattgtatagatttgaat |
217 |
Q |
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| T |
43712847 |
gacttgaatatgcccattattaagtttaattttgggagtgagttgaatagatttgaat |
43712904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 26150 - 26045
Alignment:
| Q |
40 |
ctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaataggttcttctatcagtttcct |
139 |
Q |
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||||||| ||||| |||| |||||| |||||||||||||||||||||||| | ||||||||||| || |||||||| |||||||| || |||||||||| |
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| T |
26150 |
ctgcagccagcaagttcatgcctgtggttggtgcttttattgcagattcttatttgggtcgattcttaagtgttggattaggttctgctgtcagtttcct |
26051 |
T |
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| Q |
140 |
ggtatg |
145 |
Q |
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|||||| |
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| T |
26050 |
ggtatg |
26045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 25272062 - 25272186
Alignment:
| Q |
21 |
cagatacttcttttatcctctgcagctagcaatttcacacctgtgattggtgcttttattgcagattcttttctgggtcgattcctaggtgttggaatag |
120 |
Q |
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|||||||| || ||||| ||||||| |||| |||| |||||| ||||||||||| |||||||||||| | ||||| ||||| || |||||||| ||| |
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| T |
25272062 |
cagatactcctcttatctgctgcagccggcaagttcatgcctgtggttggtgcttttgttgcagattcttatttgggtagattcttaagtgttggattag |
25272161 |
T |
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| Q |
121 |
gttcttctatcagtttcctggtatg |
145 |
Q |
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||||| || |||||||||||||||| |
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| T |
25272162 |
gttctgctgtcagtttcctggtatg |
25272186 |
T |
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