View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12184_high_5 (Length: 326)

Name: NF12184_high_5
Description: NF12184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12184_high_5
NF12184_high_5
[»] chr5 (21 HSPs)
chr5 (5-326)||(38816618-38816932)
chr5 (116-191)||(19820428-19820503)
chr5 (36-165)||(22423764-22423895)
chr5 (124-191)||(22013364-22013431)
chr5 (117-191)||(42469171-42469245)
chr5 (34-83)||(8420075-8420124)
chr5 (117-166)||(15410483-15410532)
chr5 (117-169)||(6326332-6326384)
chr5 (36-88)||(9929668-9929720)
chr5 (68-144)||(3966500-3966577)
chr5 (116-159)||(9449451-9449494)
chr5 (118-176)||(15382442-15382500)
chr5 (34-64)||(24906250-24906280)
chr5 (117-147)||(27932229-27932259)
chr5 (119-152)||(6035472-6035505)
chr5 (116-169)||(21191090-21191143)
chr5 (114-143)||(32766975-32767004)
chr5 (116-152)||(17123037-17123073)
chr5 (125-169)||(21522722-21522766)
chr5 (125-169)||(21533288-21533332)
chr5 (116-152)||(27144452-27144488)
[»] chr7 (26 HSPs)
chr7 (117-191)||(27944991-27945065)
chr7 (66-147)||(29787354-29787434)
chr7 (117-191)||(24105629-24105702)
chr7 (36-146)||(11700798-11700909)
chr7 (116-169)||(11722132-11722185)
chr7 (85-147)||(19206044-19206107)
chr7 (68-178)||(24339605-24339716)
chr7 (73-150)||(30731028-30731104)
chr7 (68-152)||(32308109-32308194)
chr7 (116-176)||(1433419-1433479)
chr7 (36-196)||(7328639-7328805)
chr7 (120-191)||(2034392-2034462)
chr7 (116-167)||(2425767-2425818)
chr7 (76-147)||(11072292-11072362)
chr7 (116-191)||(43027503-43027578)
chr7 (117-176)||(43249958-43250017)
chr7 (116-158)||(8046061-8046103)
chr7 (68-134)||(9933282-9933347)
chr7 (85-152)||(22484014-22484082)
chr7 (116-146)||(23191891-23191921)
chr7 (116-166)||(26733279-26733329)
chr7 (117-147)||(28155564-28155594)
chr7 (35-64)||(17852091-17852120)
chr7 (118-167)||(49107795-49107844)
chr7 (36-64)||(15680900-15680928)
chr7 (116-152)||(20549780-20549816)
[»] chr6 (29 HSPs)
chr6 (68-169)||(10294079-10294181)
chr6 (116-176)||(9027143-9027203)
chr6 (116-191)||(853893-853968)
chr6 (68-176)||(16766662-16766771)
chr6 (116-176)||(5000660-5000720)
chr6 (36-176)||(5732474-5732604)
chr6 (123-191)||(8365560-8365628)
chr6 (36-135)||(8805524-8805625)
chr6 (117-189)||(12696277-12696348)
chr6 (68-176)||(9107355-9107464)
chr6 (116-167)||(9629357-9629408)
chr6 (116-191)||(30866178-30866253)
chr6 (117-191)||(6389693-6389767)
chr6 (116-166)||(9658854-9658904)
chr6 (116-154)||(19040339-19040377)
chr6 (123-191)||(3398569-3398637)
chr6 (116-176)||(7938081-7938141)
chr6 (117-165)||(13851712-13851760)
chr6 (36-83)||(426478-426525)
chr6 (117-176)||(7977865-7977924)
chr6 (116-147)||(20371144-20371175)
chr6 (85-168)||(31579229-31579311)
chr6 (34-64)||(34073276-34073306)
chr6 (73-176)||(34073337-34073441)
chr6 (116-169)||(426548-426601)
chr6 (36-77)||(2117134-2117175)
chr6 (116-157)||(7265627-7265668)
chr6 (116-168)||(8777007-8777059)
chr6 (116-176)||(34595099-34595159)
[»] chr8 (13 HSPs)
chr8 (68-169)||(22651948-22652050)
chr8 (68-174)||(29510289-29510396)
chr8 (123-191)||(25192388-25192456)
chr8 (116-182)||(926822-926888)
chr8 (116-169)||(27213519-27213572)
chr8 (123-191)||(126390-126457)
chr8 (116-191)||(13436998-13437073)
chr8 (116-159)||(31109552-31109595)
chr8 (116-147)||(39954313-39954344)
chr8 (116-178)||(24362236-24362298)
chr8 (117-149)||(4611526-4611558)
chr8 (116-156)||(31236611-31236651)
chr8 (83-139)||(37283812-37283867)
[»] chr2 (21 HSPs)
chr2 (80-191)||(21782817-21782927)
chr2 (127-191)||(33519736-33519800)
chr2 (116-191)||(20539708-20539783)
chr2 (85-176)||(4332891-4332981)
chr2 (85-143)||(1327976-1328033)
chr2 (116-166)||(21616737-21616787)
chr2 (118-191)||(19536434-19536507)
chr2 (119-192)||(23717976-23718048)
chr2 (119-192)||(24105648-24105720)
chr2 (68-141)||(44860320-44860394)
chr2 (36-83)||(19536361-19536408)
chr2 (36-83)||(19574031-19574078)
chr2 (37-83)||(18255945-18255991)
chr2 (37-83)||(34691770-34691816)
chr2 (37-83)||(34714182-34714228)
chr2 (68-166)||(36409614-36409711)
chr2 (91-144)||(18276518-18276570)
chr2 (125-190)||(21624217-21624282)
chr2 (116-152)||(28677898-28677934)
chr2 (116-144)||(37411278-37411306)
chr2 (36-72)||(42511322-42511358)
[»] scaffold0306 (1 HSPs)
scaffold0306 (116-192)||(13349-13425)
[»] scaffold0223 (1 HSPs)
scaffold0223 (36-191)||(20122-20279)
[»] scaffold0152 (1 HSPs)
scaffold0152 (116-192)||(21902-21978)
[»] chr1 (22 HSPs)
chr1 (116-168)||(6427323-6427375)
chr1 (116-176)||(40917716-40917776)
chr1 (116-175)||(398799-398858)
chr1 (36-89)||(48547938-48547991)
chr1 (116-168)||(2896155-2896207)
chr1 (37-183)||(10572535-10572690)
chr1 (117-192)||(5376535-5376609)
chr1 (116-191)||(5927374-5927449)
chr1 (34-137)||(44482234-44482343)
chr1 (117-166)||(41877505-41877554)
chr1 (116-160)||(12443494-12443538)
chr1 (116-152)||(17831565-17831601)
chr1 (116-152)||(36878450-36878486)
chr1 (77-169)||(1486703-1486796)
chr1 (76-176)||(38503285-38503386)
chr1 (123-178)||(48040503-48040558)
chr1 (91-169)||(1262856-1262933)
chr1 (116-166)||(9709795-9709845)
chr1 (116-166)||(34298411-34298461)
chr1 (117-191)||(39130802-39130876)
chr1 (68-146)||(25361881-25361960)
chr1 (116-152)||(19562655-19562691)
[»] chr3 (24 HSPs)
chr3 (116-191)||(8383207-8383282)
chr3 (79-178)||(5441029-5441128)
chr3 (66-147)||(8039818-8039900)
chr3 (117-176)||(24205076-24205135)
chr3 (125-191)||(8842280-8842346)
chr3 (95-160)||(5407261-5407325)
chr3 (116-176)||(3164059-3164119)
chr3 (116-176)||(28917966-28918026)
chr3 (117-176)||(4991002-4991061)
chr3 (123-182)||(10335327-10335386)
chr3 (68-191)||(25064859-25064981)
chr3 (116-191)||(55401025-55401100)
chr3 (34-72)||(4466538-4466576)
chr3 (34-64)||(5440965-5440995)
chr3 (116-190)||(8587055-8587129)
chr3 (117-167)||(9800014-9800064)
chr3 (34-72)||(13807237-13807275)
chr3 (116-190)||(32429414-32429488)
chr3 (116-168)||(2620087-2620139)
chr3 (116-168)||(14979154-14979206)
chr3 (116-176)||(15796328-15796388)
chr3 (116-168)||(26492239-26492291)
chr3 (36-72)||(27505334-27505370)
chr3 (95-147)||(34307794-34307845)
[»] scaffold0168 (3 HSPs)
scaffold0168 (36-182)||(21002-21149)
scaffold0168 (36-97)||(21217-21278)
scaffold0168 (36-97)||(21346-21407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (116-176)||(8763-8823)
[»] scaffold0007 (1 HSPs)
scaffold0007 (117-176)||(225303-225362)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-176)||(241559-241668)
[»] scaffold0004 (1 HSPs)
scaffold0004 (117-158)||(92790-92831)
[»] scaffold0044 (1 HSPs)
scaffold0044 (66-147)||(53174-53256)
[»] scaffold0018 (2 HSPs)
scaffold0018 (116-188)||(178853-178925)
scaffold0018 (117-158)||(192284-192325)
[»] chr4 (8 HSPs)
chr4 (116-176)||(23293020-23293080)
chr4 (117-152)||(35723420-35723455)
chr4 (118-152)||(17345451-17345485)
chr4 (68-139)||(30982863-30982935)
chr4 (117-174)||(847918-847975)
chr4 (116-169)||(36635296-36635349)
chr4 (36-80)||(18844423-18844467)
chr4 (36-72)||(28470448-28470484)
[»] scaffold0652 (1 HSPs)
scaffold0652 (116-176)||(496-556)
[»] scaffold0450 (1 HSPs)
scaffold0450 (36-64)||(8564-8592)
[»] scaffold0279 (1 HSPs)
scaffold0279 (115-147)||(17903-17935)
[»] scaffold0027 (1 HSPs)
scaffold0027 (34-82)||(46731-46778)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 38816618 - 38816932
Alignment:
Q  5 tctccaagaatatcacgattcacgaatataactatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataa 104  Q
    ||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38816618 tctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattatac 38816717  T
Q  105 tgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatatggttaccg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||| ||||||||||||||||||||||||    
T  38816718 tgaaatatagcgattttctcaaattattagcggtgtcggcgtgtcagtatccgtgc-------ggagtccgtattagtgcttcatagtatatggttaccg 38816810  T
Q  205 ttcaattattctattttctcaaattattgcttcaattcaagcaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactattttt 304  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816811 ttcaattattctattttctcaaattattgcttcaattcaaacaatgatacaaacaatataccatattacattaattgaattgtaaaacccaactattttt 38816910  T
Q  305 aacctgcagcgactctctgttg 326  Q
    ||||||||||||||||||||||    
T  38816911 aacctgcagcgactctctgttg 38816932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 19820428 - 19820503
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||||||||||| ||| |||| |||||| ||||||||| |||||||| ||||||||||||    
T  19820428 gattttctcaaattattagcggtgtcggagtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 19820503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 165
Target Start/End: Original strand, 22423764 - 22423895
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc-gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| | ||||| ||||||||||| ||||||||| |||  |||||| |||| ||| | |||||||||||||||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtccagacaccgacacgacaccgacatatataattatattgaattat-gtgattttctcaaattatt 22423862  T
Q  133 agcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    ||  ||||| | ||| ||||||||||| |||||    
T  22423863 agtagtgtcagggtgtcagtatccgtgtcgtgt 22423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 22013431 - 22013364
Alignment:
Q  124 caaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||| ||||||||||| |||| |||||| ||||||||| |||||||| ||||||||||||    
T  22013431 caaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 22013364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 42469245 - 42469171
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| | ||||||||||| || |||||||| ||||| ||| |||||| | ||||||||||||    
T  42469245 attttctcaaattattatccgtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgtgcttcatag 42469171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 8420124 - 8420075
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||| |||||||||||||| |  |||||||||||||||    
T  8420124 aactatgaagcacggatactcctcgaattaggcgcgtccgacaccgacac 8420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 15410483 - 15410532
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    ||||||| ||||||||||||||||||||||| |||| |||||| ||||||    
T  15410483 attttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 15410532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 6326332 - 6326384
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||||||||||||| ||||| |||||||||| |||| |||||| |||||||||    
T  6326332 attttctcaaattactagcgatgtcggcgtgtcagtgtccgtgtcgtgtccgg 6326384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 9929720 - 9929668
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacac 88  Q
    ||||||||||| ||||||||||||||||| | ||||||| |||||||| ||||    
T  9929720 ctatgaagcacagacactcctcgaattagtcgtgtccgataccgacacgacac 9929668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 144
Target Start/End: Complemental strand, 3966577 - 3966500
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggc 144  Q
    |||||||||| ||||| |||||||||||||  |||| | |||| | | | |||||||||||||||||||||||||||||    
T  3966577 tgtccgacactgacacgacaccgacacatataattacactgaattgt-gtgattttctcaaattattagcggtgtcggc 3966500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 9449494 - 9449451
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtg 159  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||    
T  9449494 gattttctcaaattattattggtgtcggcgtgccagtgtccgtg 9449451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 15382500 - 15382442
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||| ||||||||||||| ||||||||||| || | |||||| ||||||||| ||||||    
T  15382500 ttttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15382442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 27932259 - 27932229
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||||||||||||||||    
T  27932259 attttctcaaattattagcggtgtcggcgtg 27932229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 152
Target Start/End: Complemental strand, 6035505 - 6035472
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgccagt 152  Q
    ||||||||||||||||||||||||||||| ||||    
T  6035505 tttctcaaattattagcggtgtcggcgtgtcagt 6035472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 21191090 - 21191143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||||| ||||||||||||| |||||||| || |||| |||||| |||||||||    
T  21191090 gattttttcaaattattagctgtgtcggcatgtcagtgtccgtgtcgtgtccgg 21191143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 143
Target Start/End: Original strand, 32766975 - 32767004
Alignment:
Q  114 gcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||||||||||||||    
T  32766975 gcgattttctcaaattattagcggtgtcgg 32767004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 17123073 - 17123037
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  17123073 gattttctcaaattattagcggtgttggcgtgtcagt 17123037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21522766 - 21522722
Alignment:
Q  125 aaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    ||||||||||| ||||||||||| |||| |||||| |||||||||    
T  21522766 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21522722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 21533332 - 21533288
Alignment:
Q  125 aaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    ||||||||||| ||||||||||| |||| |||||| |||||||||    
T  21533332 aaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 21533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 27144488 - 27144452
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  27144488 gatttcctcaaattattagcggtgtcggcgtgtcagt 27144452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 27945065 - 27944991
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||| |||||||||||| |||| |||||| ||||||||| |||||||| ||||||||||||    
T  27945065 attttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttcatag 27944991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 29787354 - 29787434
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    ||||||| |||||||||  ||||| ||||||||||| | |||| ||| | ||||||||||||||||||||||||||||||||    
T  29787354 catgtccaacaccgacattacaccaacacataattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtg 29787434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 24105702 - 24105629
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||| ||||||||||||| ||||||||||| |||| |||||| |||||||| | ||||||| ||||||||||||    
T  24105702 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccgta-tccgtatccgtgcttcatag 24105629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 146
Target Start/End: Complemental strand, 11700909 - 11700798
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgt--ccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatta 133  Q
    ||||||| || |||||||||||| ||||||| |||  |||||||||| || |||| |||||||||||| | |||| ||| | |||||| |||||||||||    
T  11700909 ctatgaatcagggacactcctcggattagccgtgtgtccgacaccgagacaacacagacacataattacattgaattat-gtgattttgtcaaattatta 11700811  T
Q  134 gcggtgtcggcgt 146  Q
     ||||||| ||||    
T  11700810 acggtgtcagcgt 11700798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 11722132 - 11722185
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||||||||||||| ||||||||||||||||| |||| |||||| |||||||||    
T  11722132 gattttctcaaattgttagcggtgtcggcgtgtcagtgtccgtgtcgtgtccgg 11722185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 19206107 - 19206044
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||  ||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  19206107 acaccgacacatataattataatgaattat-gtgattttctcaaattattagcggtgtcggcgtg 19206044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 178
Target Start/End: Complemental strand, 24339716 - 24339605
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| ||||||||||| || | ||| || |||||    
T  24339716 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcaatgtccatgtcgtgt 24339618  T
Q  166 ccggagtccgtat 178  Q
    |||| ||||||||    
T  24339617 ccggtgtccgtat 24339605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 30731104 - 30731028
Alignment:
Q  73 gacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgcca 150  Q
    |||||| |||| ||||||||||| ||||| | |||| ||| | ||||||||||||||||| |||||||||||||||||    
T  30731104 gacaccaacacgacaccgacacacaattacactgaattat-gtgattttctcaaattattcgcggtgtcggcgtgcca 30731028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 32308194 - 32308109
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    ||||| |||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  32308194 tgtccaacaccgacacgacactgacacatacaattacactgaattat-gtgattttctcaaattattagcggtgtcggcgtgtcagt 32308109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 1433479 - 1433419
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||||||||||||| ||||||||||||| || | |||||| ||||| ||| ||||||    
T  1433479 gattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgt 1433419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 7328639 - 7328805
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacacc-----gacaccacaccgacacata--attataatgaaatatagcgattttctcaaat 128  Q
    |||||||||||| |||||| ||| ||||| | |||||||||||     ||||| |||||||||||||  |||| | | || ||| |  ||||||||||||    
T  7328639 ctatgaagcacgaacactcatcggattaggcgtgtccgacaccaacacgacacgacaccgacacatataattacactaaattat-gttattttctcaaat 7328737  T
Q  129 tattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagtatat 196  Q
    ||||||| || ||| ||||  | | || ||| ||||| ||| |||||||| |||||||||||||||||    
T  7328738 tattagcagtatcgacgtgttaatgtctgtgtcgtgttcggtgtccgtatccgtgcttcatagtatat 7328805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 2034462 - 2034392
Alignment:
Q  120 ttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||| ||||||| ||||  |||||||||| |||||| | | ||||||| ||||||||||||    
T  2034462 ttctcaaattattagtggtgtcgacgtgtaagtatccgtgtcgtgtcagta-tccgtatccgtgcttcatag 2034392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 2425767 - 2425818
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||| |||||||    
T  2425767 gattttctcaaattattaacggtgccggcgtgtcagtatctgtgtcgtgtcc 2425818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 11072362 - 11072292
Alignment:
Q  76 accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||| ||||||||||||||||||| |||| ||||    |||| ||||||||||| |||||||||||||    
T  11072362 accgacacgacaccgacacataattatattgaattata-tatttttttcaaattattatcggtgtcggcgtg 11072292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 43027503 - 43027578
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| | |||| |||| |||| |||||| ||||||| | ||||| || ||||||||||||    
T  43027503 gattttttcaaattattagctgggtcgccgtgtcagtgtccgtgtcgtgtccagtgtccgcatccgtgcttcatag 43027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 43250017 - 43249958
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | ||||||||||| |||| |||||| | ||||||| ||||||    
T  43250017 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcttgtccggtgtccgt 43249958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 8046061 - 8046103
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgt 158  Q
    ||||||||||||||||||| ||||| |||||| ||||||||||    
T  8046061 gattttctcaaattattagtggtgttggcgtgtcagtatccgt 8046103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 9933347 - 9933282
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattag 134  Q
    |||||||||||||||| |||| ||||||||| | || |||||||| | |||||| ||||||||||||    
T  9933347 tgtccgacaccgacacgacactgacacataagtttactgaaatat-gtgattttttcaaattattag 9933282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 22484082 - 22484014
Alignment:
Q  85 acaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||  |||||| |||| ||| || ||||||| ||||||||||||||||||||||| ||||    
T  22484082 acaccgacacatataattatactgaattat-gcaattttctaaaattattagcggtgtcggcgtgtcagt 22484014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Complemental strand, 23191921 - 23191891
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgt 146  Q
    |||||||||||||||||||||||||||||||    
T  23191921 gattttctcaaattattagcggtgtcggcgt 23191891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 26733329 - 26733279
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    |||||| |||||||||||||||||||| |||| |||| |||||| ||||||    
T  26733329 gattttgtcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgtc 26733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 147
Target Start/End: Complemental strand, 28155594 - 28155564
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||||||||||||||||    
T  28155594 attttctcaaattattagcggtgtcggcgtg 28155564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  35 actatgaagcacggacactcctcgaattag 64  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 49107844 - 49107795
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||||||||||| ||| |||  |||||| |||||||    
T  49107844 ttttctcaaattattagcggtgtcggtgtgtcagagtccgtgtcgtgtcc 49107795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 20549816 - 20549780
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  20549816 gattttctcaaattattagcggtgtcggtgtgtcagt 20549780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 10294181 - 10294079
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    ||||||||||| |||| |||||||||||||  |||| | |||||||| |||||| |||||||||||||||||| ||||| || ||||||||||| |||||    
T  10294181 tgtccgacaccaacacgacaccgacacatataattacattgaaatat-gcgattatctcaaattattagcggtatcggcatgtcagtatccgtgtcgtgt 10294083  T
Q  166 ccgg 169  Q
    ||||    
T  10294082 ccgg 10294079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 9027203 - 9027143
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  9027203 gattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgt 9027143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 853893 - 853968
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||  ||||||||||| ||| ||||||| ||||||||| |||||||| |||| |||||||    
T  853893 gattttttcaaattattagttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgtgattcatag 853968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 16766771 - 16766662
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| ||| | |||||| ||||||||||||| ||||||||||| |||| ||| || |||||    
T  16766771 tgtccgacaccgacacgacaccgacacttgtaattacactgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgt 16766673  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  16766672 ccggtgtccgt 16766662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 5000660 - 5000720
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||| ||||||||||||||||| |||| ||||||||||| | ||||||| ||||||    
T  5000660 gattttctcgaattattagcggtgtcgacgtgtcagtatccgtgtcatgtccggtgtccgt 5000720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 176
Target Start/End: Original strand, 5732474 - 5732604
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagc 135  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||         | ||||||| | | |||||| | |||||||||||||||||| |    
T  5732474 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac---------atataattacactaaaatat-gtgattttctcaaattattaac 5732563  T
Q  136 ggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||||||||| |||| ||| || ||||||| | ||||||    
T  5732564 ggtgtcggcgtgtcagtgtccatgtcgtgtccagtgtccgt 5732604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 8365560 - 8365628
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||  ||||||||||| |||| |||||| |||||| || |||||||| ||||||||||||    
T  8365560 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtctggtgtccgtatccgtgcttcatag 8365628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 8805524 - 8805625
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgac---accgacaccacaccgacacataattataatgaaatatagcgattttctcaaattatt 132  Q
    ||||||||||||||||||||||| ||||| ||||||| ||    | ||||| ||||||||||||||||| | | || ||| | |||||||||||||||||    
T  8805524 ctatgaagcacggacactcctcggattaggcatgtcccacgtgtctgacactacaccgacacataattacactaaattat-gtgattttctcaaattatt 8805622  T
Q  133 agc 135  Q
    |||    
T  8805623 agc 8805625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 12696348 - 12696277
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcat 189  Q
    ||||| ||||||||||||| ||||||||||| |||| |||||| ||||||| | |||||||| ||||||||||    
T  12696348 attttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtcc-gtgtccgtatccgtgcttcat 12696277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Original strand, 9107355 - 9107464
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||| | |||| | | | |||||| ||||||||||||| |||||||||||  ||| |||||| |||||    
T  9107355 tgtccgacaccgacacgacaccgacacttgtaattacactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgttagtgtccgtgtcgtgt 9107453  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  9107454 ccggtgtccgt 9107464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 9629408 - 9629357
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtcc 167  Q
    ||||||||||||||||| |||||||||||||| || |||||||| |||||||    
T  9629408 gattttctcaaattattggcggtgtcggcgtgtcaatatccgtgtcgtgtcc 9629357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 30866178 - 30866253
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||||||||||| || ||| | || || ||| | ||||||| |||||||||||| ||||||||    
T  30866178 gattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtcatgtccggtgtccgtattcgtacttcatag 30866253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 6389767 - 6389693
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| | |||||||||||  ||| |||||| ||||||||| ||| || | ||||||||||||    
T  6389767 attttctcaaattattatccgtgtcggcgtgtgagtgtccgtgtcgtgtccggtgtctgtgtccgtgcttcatag 6389693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9658904 - 9658854
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    |||||||| ||||||||||||||||||||||| |||| |||||| ||||||    
T  9658904 gattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtc 9658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 19040377 - 19040339
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtat 154  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  19040377 gattttctcaaattattagcggtgtcggcgtgtcagtat 19040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 3398637 - 3398569
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||| ||||||||||| |||| |||||| ||||| ||  |||||||| | ||||||||||    
T  3398637 tcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgttcgatgtccgtatccatgcttcatag 3398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 7938141 - 7938081
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||| |||| ||| || ||||||||| ||||||    
T  7938141 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 13851760 - 13851712
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||||||||||||| |||| |||| |||||| |||||    
T  13851760 attttctcaaattattagcggtgtcgacgtgtcagtgtccgtgtcgtgt 13851712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 426478 - 426525
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    ||||||||||||||||||||||  ||||| | ||||||||||||||||    
T  426478 ctatgaagcacggacactcctcagattaggcgtgtccgacaccgacac 426525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 7977865 - 7977924
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||| ||||||||||||| ||||||||||| |||||||| || ||||||| | ||||||    
T  7977865 attttttcaaattattagctgtgtcggcgtgtcagtatccatgtcgtgtccagtgtccgt 7977924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 20371144 - 20371175
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtg 147  Q
    ||||||||||||||||||||||||||||||||    
T  20371144 gattttctcaaattattagcggtgtcggcgtg 20371175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 31579229 - 31579311
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||| | |||| ||| | |||||||||||||||||| |||||| || ||| |||| ||| || ||||||||    
T  31579229 acaccgacacataattacactgaattat-gtgattttctcaaattattaacggtgttggtgtggcagtgtccatgtcgtgtccg 31579311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 176
Target Start/End: Original strand, 34073337 - 34073441
Alignment:
Q  73 gacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgga 170  Q
    ||||||||||| |||||||| ||||  |||| | |||| ||| | ||||||||||||||||||||| ||| ||| || |||| |||||| ||||||| |     
T  34073337 gacaccgacacgacaccgacccatataattacactgaattat-gagattttctcaaattattagcgatgttggcatgtcagtgtccgtgtcgtgtccagt 34073435  T
Q  171 gtccgt 176  Q
    ||||||    
T  34073436 gtccgt 34073441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 426548 - 426601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||||| ||||||||||| | ||||||||||| |||| |||||| |||||||||    
T  426548 gattttttcaaattattaactgtgtcggcgtgtcagtgtccgtgtcgtgtccgg 426601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 2117175 - 2117134
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacac 77  Q
    ||||||||||||||||||||||  ||||| ||||||||||||    
T  2117175 ctatgaagcacggacactcctccgattaggcatgtccgacac 2117134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 7265627 - 7265668
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccg 157  Q
    ||||||||||||||||||||||||| |||||| |||| ||||    
T  7265627 gattttctcaaattattagcggtgttggcgtgtcagtgtccg 7265668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 8777007 - 8777059
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||  ||||||||||| |||| |||||| ||||||||    
T  8777007 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccg 8777059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 34595159 - 34595099
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||  ||||||||||| || | |||||| ||||||||| ||||||    
T  34595159 gattttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 34595099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 22652050 - 22651948
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| ||| | |||||| ||||||||||||| ||||||||||| |||| |||||| |||||    
T  22652050 tgtccgacaccgacacgacaccgacacttgtaattatattgaattat-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 22651952  T
Q  166 ccgg 169  Q
    ||||    
T  22651951 ccgg 22651948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 174
Target Start/End: Original strand, 29510289 - 29510396
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    |||||||||||||||| |||||||||| |  ||||||| |||| | | | |||||| ||||||||||||| ||||||||||| |||| |||||| |||||    
T  29510289 tgtccgacaccgacactacaccgacacttgtaattatactgaatttt-gtgattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 29510387  T
Q  166 ccggagtcc 174  Q
    |||| ||||    
T  29510388 ccggtgtcc 29510396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 25192388 - 25192456
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||| ||||||||||| |||| |||||  ||||||||  |||||||||||||||||||||    
T  25192388 tcaaattattagctgtgtcggcgtgtcagtgtccgtatcgtgtccgatgtccgtattcgtgcttcatag 25192456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 926822 - 926888
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgt 182  Q
    |||||||||||||||||||  |||| |||||| |||| |||||| ||||||||| |||||| |||||    
T  926822 gattttctcaaattattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 926888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 27213572 - 27213519
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||| |||||||||    
T  27213572 gattttctgaaattattagcagtgtcggcgtgtctgtatccgtgtcgtgtccgg 27213519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 126390 - 126457
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||| |||||| ||||||||||  ||||||| | || ||||| ||||||||||||    
T  126390 tcaaattattagcggtgttggcgtgtcagtatccgtatcgtgtcc-gtgtgcgtatccgtgcttcatag 126457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 13436998 - 13437073
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| ||||||||||| |||| ||| || | ||||||| |||| | | ||||||||||||    
T  13436998 gattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcatgtccggtgtccatgtccgtgcttcatag 13437073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 31109552 - 31109595
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtg 159  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||    
T  31109552 gattttctcaaattattaacggtgtcggcgtgtcagtgtccgtg 31109595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 147
Target Start/End: Original strand, 39954313 - 39954344
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtg 147  Q
    ||||||||||||||||||||||||||||||||    
T  39954313 gattttctcaaattattagcggtgtcggcgtg 39954344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 24362236 - 24362298
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtat 178  Q
    |||| ||||||||||||||||||||||||||| | || || ||| ||| ||||| ||||||||    
T  24362236 gattctctcaaattattagcggtgtcggcgtgtcggtgtctgtgtcgtatccggtgtccgtat 24362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 4611558 - 4611526
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgcc 149  Q
    ||||||||||||||||||||||||||| |||||    
T  4611558 attttctcaaattattagcggtgtcggtgtgcc 4611526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 31236611 - 31236651
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatcc 156  Q
    |||||||||||||||||||| ||||||||||| | ||||||    
T  31236611 gattttctcaaattattagcagtgtcggcgtgtccgtatcc 31236651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 139
Target Start/End: Original strand, 37283812 - 37283867
Alignment:
Q  83 ccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtg 139  Q
    ||||||||||||||||||| | |||| ||| | |||||||||| |||||||||||||    
T  37283812 ccacaccgacacataattacactgaattat-gtgattttctcagattattagcggtg 37283867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 191
Target Start/End: Original strand, 21782817 - 21782927
Alignment:
Q  80 acaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtatt 179  Q
    |||| |||||| |||||||||| | |||| ||| | |||||||||||||||||||| ||||||||||| |||| |  ||| ||||||| | ||| |||||    
T  21782817 acacgacaccggcacataattacactgaattat-gtgattttctcaaattattagcagtgtcggcgtgtcagtgtttgtgtcgtgtccagtgtctgtatt 21782915  T
Q  180 cgtgcttcatag 191  Q
    ||||||||||||    
T  21782916 cgtgcttcatag 21782927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 33519800 - 33519736
Alignment:
Q  127 attattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||||||||||||| ||| ||||||||| | ||||||||| |||||||| ||||||||||||    
T  33519800 attattagcggtgtcggtgtgtcagtatccgcgtcgtgtccggtgtccgtatccgtgcttcatag 33519736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 20539708 - 20539783
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| |||||| |||| |||| |||||| ||||||| | |||||||| ||||||||||||    
T  20539708 gattttttcaaattattagctgtgtcgacgtgtcagtgtccgtgtcgtgtccagtgtccgtatccgtgcttcatag 20539783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 4332981 - 4332891
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | |||| ||| | ||||||| |||||||||| | |||||||| ||  |||||| ||||||||||||| ||||||    
T  4332981 acaccgacacataattacattgaattat-gtgattttcccaaattattatcagtgtcggcatgtaagtatctgtgccgtgtccggtgtccgt 4332891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 1328033 - 1327976
Alignment:
Q  85 acaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcgg 143  Q
    ||||||||||||||||||| |||| | ||  ||||||||||||||||||||||||||||    
T  1328033 acaccgacacataattatactgaattttat-gattttctcaaattattagcggtgtcgg 1327976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 21616787 - 21616737
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    |||||||||||||||||||||||||||||||| | || |||||| ||||||    
T  21616787 gattttctcaaattattagcggtgtcggcgtgtccgtgtccgtgtcgtgtc 21616737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 19536434 - 19536507
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||| ||||||||||||  ||||||||||| || | |||||| ||||||||| ||||||||  |||||||||||    
T  19536434 ttttttcaaattattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 19536507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 23718048 - 23717976
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||||||||||||||||||||| ||| |||| |||||| | ||||| | ||| |||| |||||||||||||    
T  23718048 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 23717976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 24105720 - 24105648
Alignment:
Q  119 tttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||||||||||||||||||||| ||| |||| |||||| | ||||| | ||| |||| |||||||||||||    
T  24105720 tttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtcc-gtgtctgtatccgtgcttcatagt 24105648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 44860394 - 44860320
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtc 141  Q
    ||||| ||||| |||| |||||||||||||  |||| | |||| ||| ||||||||||||||||||||||||||||    
T  44860394 tgtccaacaccaacacgacaccgacacatataattacactgaattat-gcgattttctcaaattattagcggtgtc 44860320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 19536361 - 19536408
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||| |||||||||||| ||||| | ||||||||||||||||    
T  19536361 ctatgaagcatggacactcctcggattaggcgtgtccgacaccgacac 19536408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 19574078 - 19574031
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||| ||||||||||||||||||   ||||||||||||||||    
T  19574078 ctatgaagcatggacactcctcgaattaggtgtgtccgacaccgacac 19574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 18255945 - 18255991
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||||||||||||||||| | ||||| | ||||||||||||||||    
T  18255945 tatgaagcacggacactccttggattaggcgtgtccgacaccgacac 18255991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34691770 - 34691816
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34691770 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34691816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 34714182 - 34714228
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtccgacaccgacac 83  Q
    |||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  34714182 tatgaaacacggacactcctcggattaggcgtgtccgacaccgacac 34714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 166
Target Start/End: Original strand, 36409614 - 36409711
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    |||| |||||| |||  ||||||||||||||||| | | || ||| | |||||| ||||||||| |||||||||||| ||  |||||||||| ||||||    
T  36409614 tgtcagacaccaacatgacaccgacacataattacactaaattat-gtgattttttcaaattatcagcggtgtcggcatgtgagtatccgtgtcgtgtc 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 18276570 - 18276518
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggc 144  Q
    ||||||||||| | |||| || || |||||||||||||||||||||||||||||    
T  18276570 acacataattacactgaatta-agtgattttctcaaattattagcggtgtcggc 18276518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 190
Target Start/End: Complemental strand, 21624282 - 21624217
Alignment:
Q  125 aaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    ||||||||||| ||||||||||| |||| || ||| ||||| ||| |||||||| || ||||||||    
T  21624282 aaattattagctgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtatccgggcttcata 21624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 28677934 - 28677898
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||| |||||||||||||||||||||||| |||||    
T  28677934 gattttttcaaattattagcggtgtcggcgttccagt 28677898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 37411278 - 37411306
Alignment:
Q  116 gattttctcaaattattagcggtgtcggc 144  Q
    |||||||||||||||||||||||||||||    
T  37411278 gattttctcaaattattagcggtgtcggc 37411306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 42511322 - 42511358
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  42511322 ctatgaagcacggacactcctcggattagccgtgtcc 42511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 13425 - 13349
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||||||||||||||||||  ||||||||||| |||| |||||| | | ||||| |||||||| |||||||||||||    
T  13425 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 13349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 20279 - 20122
Alignment:
Q  36 ctatgaagcacggac---actcctcgaattagccatgtccgacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaaatta 130  Q
    |||||||||||||||   |||||||| ||||| | |||||  ||||||||| |||| ||||| |  ||||| | |||| ||| | |||||| ||||||||    
T  20279 ctatgaagcacggactgtactcctcggattaggcgtgtcc--caccgacacgacactgacacttgtaattacactgaattat-gtgattttttcaaatta 20183  T
Q  131 ttagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||| ||||||||||| || | |||||| ||||||||| ||||||||  |||||||||||    
T  20182 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtatctgtgcttcatag 20122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 21902 - 21978
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    |||||||||||||||||||  ||||||||||| |||| |||||| | | ||||| |||||||| |||||||||||||    
T  21902 gattttctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgtgcttcatagt 21978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 6427375 - 6427323
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    ||||||||||||||||||||||||| |||||| |||| |||||||||||||||    
T  6427375 gattttctcaaattattagcggtgttggcgtgtcagtgtccgtgccgtgtccg 6427323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 40917776 - 40917716
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||    
T  40917776 gattttttcaaattattagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgt 40917716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 398799 - 398858
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccg 175  Q
    |||||| ||||||||||||||||||||||||| |||| |||||| ||||||||| |||||    
T  398799 gattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccg 398858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 48547938 - 48547991
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacacc 89  Q
    ||||||||||||||||||||||||||||| | | |||||||||||||| |||||    
T  48547938 ctatgaagcacggacactcctcgaattaggcgtatccgacaccgacacgacacc 48547991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 2896155 - 2896207
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  |||||||    
T  2896155 gattttctcaaattattagcggtgtcggcgtgtcagtgtccgtgttgtgtccg 2896207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 10572535 - 10572690
Alignment:
Q  37 tatgaagcacggacactcctcgaattagccatgtcc--------gacaccgacaccacaccgacacat--aattataatgaaatatagcgattttctcaa 126  Q
    |||||||||||||||||||| ||||||| | |||||        |||||| |||| ||||||||||||  ||||| |  ||| ||| | |||||||||||    
T  10572535 tatgaagcacggacactccttgaattaggcgtgtccacgtgcctgacaccaacacaacaccgacacatttaattacaccgaattat-gtgattttctcaa 10572633  T
Q  127 attattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtg 183  Q
    |||||||| |||||||||||| |||| | | || ||||||||| |||||||| ||||    
T  10572634 attattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgtg 10572690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 5376535 - 5376609
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatagt 192  Q
    ||||||| |||||||||||||||||||||||  ||| |||||| |||||||||| || |||| ||||| |||||||    
T  5376535 attttcttaaattattagcggtgtcggcgtgttagtgtccgtgtcgtgtccgga-tctgtatacgtgcctcatagt 5376609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 191
Target Start/End: Original strand, 5927374 - 5927449
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||| ||||  ||||| |||| |||||| ||||||||| |||||||| ||||||| ||||    
T  5927374 gattttttcaaattattagcagtgttagcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgtgcttaatag 5927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 44482343 - 44482234
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagc-----catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaa 126  Q
    ||||||| ||||||||||||||||| ||||||     | |||||||||||||||| ||||||||||  ||||||| | |||| ||| | |||||||||||    
T  44482343 aactatggagcacggacactcctcggattagctgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgaattat-gtgattttctcaa 44482245  T
Q  127 attattagcgg 137  Q
    ||||| |||||    
T  44482244 attataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 41877505 - 41877554
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||||    
T  41877505 attttctcaaattattagcggtgtcggcgtaccagtgtctgtgtcgtgtc 41877554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 12443494 - 12443538
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgc 160  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||    
T  12443494 gattttctcaaattattagctgtgtcggcgtgtccgtatccgtgc 12443538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 17831565 - 17831601
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||||||||||||||||||||| ||||    
T  17831565 gattttctcaaattattagcggtgtcggcgtgtcagt 17831601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 152
Target Start/End: Complemental strand, 36878486 - 36878450
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||||||||||||||||||||| ||||    
T  36878486 gattttctcaaattattagcggtgtcggcgtgtcagt 36878450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 1486703 - 1486796
Alignment:
Q  77 ccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    ||||||| ||||||||||  ||||||| | |||| ||| | |||||| ||||||||||||| ||||| ||||| ||||||||||| ||| |||||    
T  1486703 ccgacacgacaccgacacttataattacactgaattat-gtgattttttcaaattattagctgtgtcagcgtgtcagtatccgtgtcgtatccgg 1486796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 38503386 - 38503285
Alignment:
Q  76 accgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtc 173  Q
    |||||||  |||||||||||||  |||| | |||||||||  |||||||||||||||||||||||||||| |||  ||| |||||| | ||||| | |||    
T  38503386 accgacaggacaccgacacatataattacactgaaatatat-gattttctcaaattattagcggtgtcggtgtgttagtgtccgtgtcatgtcccgtgtc 38503288  T
Q  174 cgt 176  Q
    |||    
T  38503287 cgt 38503285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 48040503 - 48040558
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtat 178  Q
    ||||||||||| | ||||||||||| |||| |||||| ||||||||| ||||||||    
T  48040503 tcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtat 48040558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 169
Target Start/End: Complemental strand, 1262933 - 1262856
Alignment:
Q  91 acacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    |||| |||||||| |||| ||| | |||||||||||||||||||| ||||||||||| | || | |||| |||||||||    
T  1262933 acacttaattatattgaattat-gtgattttctcaaattattagctgtgtcggcgtgtccgtgttcgtgtcgtgtccgg 1262856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9709845 - 9709795
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    ||||||||||||||||||||||||| ||| || |||| |||||| ||||||    
T  9709845 gattttctcaaattattagcggtgtaggcatgtcagtgtccgtgtcgtgtc 9709795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 34298461 - 34298411
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtc 166  Q
    ||||||||||||||||||| |||||||| ||| |||| |||||| ||||||    
T  34298461 gattttctcaaattattagtggtgtcggtgtgtcagtttccgtgtcgtgtc 34298411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 39130802 - 39130876
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    ||||||| |||||||||   ||||| ||||| || ||||| || ||||||||| |||||||| ||||||||||||    
T  39130802 attttctaaaattattaatagtgtcagcgtgtcaatatccatgtcgtgtccggtgtccgtatccgtgcttcatag 39130876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 25361960 - 25361881
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgt 146  Q
    |||||||||||||||| |||| ||||||||  |||| | |||| ||| | |||||||||||||||| || |||||||||||    
T  25361960 tgtccgacaccgacacgacactgacacatataattacactgaattat-gtgattttctcaaattatcagtggtgtcggcgt 25361881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 152
Target Start/End: Original strand, 19562655 - 19562691
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  19562655 gattttctcaaattattagcagtgtcggcgtgtcagt 19562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 8383282 - 8383207
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||||||||||||||| || | |||||| ||||||| | |||||| | |||||| |||||    
T  8383282 gattttctcaaattattagcggtgtcggcgtgtcaatgtccgtgtcgtgtccagtgtccgtgtccgtgctacatag 8383207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 5441029 - 5441128
Alignment:
Q  79 gacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgga-gtccgta 177  Q
    ||||| ||||||||||||||||  | |||| ||| | |||||||||||||| ||||||||| ||||||| |||| || ||| |||||||||| |||||||    
T  5441029 gacacaacaccgacacataattccattgaattat-gtgattttctcaaatttttagcggtgacggcgtgtcagtgtctgtgtcgtgtccggatgtccgta 5441127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 8039818 - 8039900
Alignment:
Q  66 catgtccgacaccgacaccacaccgacacata--attataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||| |||||||||||||  |||| | |||| ||||   |||||||||||||||||||||||| ||||||    
T  8039818 catgtccgacaccgacacgacaccgacacatataattacactgaattatata-attttctcaaattattagcggtgttggcgtg 8039900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 24205076 - 24205135
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | ||||||||||| |||| |||||| ||||||||| ||||||    
T  24205076 attttctcaaattattatccgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 24205135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 191
Target Start/End: Complemental strand, 8842346 - 8842280
Alignment:
Q  125 aaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||||||||||||||||| || || | |||||| ||| ||||| |||||||| ||||||||||||    
T  8842346 aaattattagcggtgtcggcatgtcaatttccgtgtcgtatccggtgtccgtatccgtgcttcatag 8842280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 5407261 - 5407325
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgc 160  Q
    ||||||| |||||| ||| | |||||||||||||| ||||||||||||||||| | ||||||||||    
T  5407261 ataattacaatgaattat-gtgattttctcaaatttttagcggtgtcggcgtgtcggtatccgtgc 5407325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 3164059 - 3164119
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| |||||| ||||||| | |||||| ||||||||| ||||||    
T  3164059 gattttttcaaattattagctgtgtcgacgtgccattgtccgtgtcgtgtccggtgtccgt 3164119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 28918026 - 28917966
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| |||||||||||||  |||||||||| |||| |||||| ||||||||| ||||||    
T  28918026 gattttttcaaattattagctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgt 28917966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 4991002 - 4991061
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||| ||||||||||||||| ||| |||| |||||| ||||| ||| ||||||    
T  4991002 attttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgt 4991061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 10335327 - 10335386
Alignment:
Q  123 tcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgt 182  Q
    ||||||||||||  ||||||||||| |||| |||||| ||||||||| |||||| |||||    
T  10335327 tcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgt 10335386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 191
Target Start/End: Complemental strand, 25064981 - 25064859
Alignment:
Q  68 tgtccgacaccgacaccacaccgacacataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtcc 167  Q
    ||||||||||| |||| | ||| ||||||||||| | | || ||| | |||||| |||||| |||||||||||||||||| || | || ||| |||||||    
T  25064981 tgtccgacaccaacacgataccaacacataattacactaaattat-gtgattttttcaaatcattagcggtgtcggcgtgtcaatgtctgtgtcgtgtcc 25064883  T
Q  168 ggagtccgtattcgtgcttcatag 191  Q
    || ||| |||  |||| |||||||    
T  25064882 ggtgtctgtacccgtgtttcatag 25064859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 55401100 - 55401025
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcatag 191  Q
    |||||| ||||||||||||  ||||||||||  |||| |||||| ||| ||||| ||||||||  |||||||||||    
T  55401100 gattttttcaaattattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgtatctgtgcttcatag 55401025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 4466538 - 4466576
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtcc 4466576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 64
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  34 aactatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 8587055 - 8587129
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    |||||| |||||||| |||  ||||||||||| |||| |||||| | ||||||| ||||||||  ||||||||||    
T  8587055 gattttttcaaattactagatgtgtcggcgtgtcagtgtccgtgtcatgtccggtgtccgtatctgtgcttcata 8587129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 9800064 - 9800014
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtcc 167  Q
    |||||||||||||||||| |||||||||||| |||| | |||| |||||||    
T  9800064 attttctcaaattattagaggtgtcggcgtgtcagtgtacgtgtcgtgtcc 9800014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 13807275 - 13807237
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtcc 13807237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 190
Target Start/End: Original strand, 32429414 - 32429488
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttcata 190  Q
    |||||||| |||||||||||| |||||| ||| || | | ||||  |||||||| |||||||| |||||||||||    
T  32429414 gattttcttaaattattagcgttgtcggagtgtcaatgttcgtgttgtgtccggtgtccgtatacgtgcttcata 32429488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 2620087 - 2620139
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    ||||||||||||| ||||| |||||||||||| |||| |||| | ||||||||    
T  2620087 gattttctcaaatgattagtggtgtcggcgtgtcagtgtccgagtcgtgtccg 2620139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 14979206 - 14979154
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    |||||| ||||||||||||| |||||||||||||| | ||| || ||||||||    
T  14979206 gattttttcaaattattagctgtgtcggcgtgccattgtccttgtcgtgtccg 14979154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 15796328 - 15796388
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||| | ||||||||||| || | |||||| ||||||||| ||||||    
T  15796328 gattttttcaaattattaactgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 15796388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 26492239 - 26492291
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccg 168  Q
    |||||| |||||||||||||  |||||||||| |||| |||||| ||||||||    
T  26492239 gattttttcaaattattagctctgtcggcgtgtcagtgtccgtgtcgtgtccg 26492291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 27505370 - 27505334
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcc 27505334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 34307794 - 34307845
Alignment:
Q  95 ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    ||||||| | |||||||| | |||||||||||||||||||||||||| |||||    
T  34307794 ataattacactgaaatat-gtgattttctcaaattattagcggtgtcagcgtg 34307845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 21149 - 21002
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattatta 133  Q
    |||||||||||||| ||| |||| ||||| | |||| ||||||||||| | ||||||||  |||||||||  ||  ||| | ||||||||||||||||||    
T  21149 ctatgaagcacggatacttctcggattaggcgtgtctgacaccgacacgataccgacacatataattataccgacttat-gtgattttctcaaattatta 21051  T
Q  134 gcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgt 182  Q
     | ||||| || || |||| |||||| |||||| || |||||| |||||    
T  21050 accgtgtcagcatgtcagtgtccgtgtcgtgtctggtgtccgtgttcgt 21002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21278 - 21217
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    |||||||||||||| |||||||| ||||| | |||| ||||||||||| | |||||||||||    
T  21278 ctatgaagcacggatactcctcggattaggcgtgtctgacaccgacacgataccgacacata 21217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 21407 - 21346
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccgacaccacaccgacacata 97  Q
    ||||||||||| |||||| |||| ||||| | |||| ||||||||||| | |||||||||||    
T  21407 ctatgaagcacagacacttctcggattaggcgtgtctgacaccgacacgataccgacacata 21346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 8823 - 8763
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||| |||| |||||| ||||||||| ||||||    
T  8823 gattttttcaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 8763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 225303 - 225362
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    ||||||||||||||||| | ||||||||||| |||| |||||| ||||||||| ||||||    
T  225303 attttctcaaattattatctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgt 225362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 241668 - 241559
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgt 165  Q
    ||||||||||| |||| ||||||||||  ||||||| | | || ||| | ||||||  |||||||||||| ||||||||||| |||| |||||| |||||    
T  241668 tgtccgacaccaacacgacaccgacactcataattacactaaattat-gtgatttttccaaattattagctgtgtcggcgtgtcagtgtccgtgtcgtgt 241570  T
Q  166 ccggagtccgt 176  Q
    |||| ||||||    
T  241569 ccggtgtccgt 241559  T

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Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 92831 - 92790
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgt 158  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  92831 attttctcaaattattagcggtgtcggcgtgtcagtgtccgt 92790  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Complemental strand, 53256 - 53174
Alignment:
Q  66 catgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtgtcggcgtg 147  Q
    ||||||||||||||||||  |||||||||  ||||||| | |||| ||| | ||||||||||||||||| ||||| ||||||||    
T  53256 catgtccgacaccgacacggcaccgacacttataattacactgaattat-gtgattttctcaaattattggcggtatcggcgtg 53174  T

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Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 188
Target Start/End: Original strand, 178853 - 178925
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgtattcgtgcttca 188  Q
    |||||| ||||||||||||  ||||||||||| |||| |||||| ||||||||| |||  ||| |||||||||    
T  178853 gattttttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcaatatccgtgcttca 178925  T

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Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 192284 - 192325
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgt 158  Q
    ||||||||||||||||| ||||||||||||| |||| |||||    
T  192284 attttctcaaattattaacggtgtcggcgtgtcagtgtccgt 192325  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 23293020 - 23293080
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||| || | |||||| ||||||||| ||||||    
T  23293020 gattttttcaaattattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgt 23293080  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 117 - 152
Target Start/End: Original strand, 35723420 - 35723455
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagt 152  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35723420 attttctcaaattattagcggtgtcggcgtgtcagt 35723455  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 152
Target Start/End: Original strand, 17345451 - 17345485
Alignment:
Q  118 ttttctcaaattattagcggtgtcggcgtgccagt 152  Q
    |||||||||||||||||||||||||||||| ||||    
T  17345451 ttttctcaaattattagcggtgtcggcgtgtcagt 17345485  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 30982863 - 30982935
Alignment:
Q  68 tgtccgacaccgacaccacaccgacac--ataattataatgaaatatagcgattttctcaaattattagcggtg 139  Q
    |||| ||||||||||| ||||||||||  ||||||| | |||||||| | ||||||||||||| ||||||||||    
T  30982863 tgtctgacaccgacacgacaccgacacttataattacactgaaatat-gtgattttctcaaatcattagcggtg 30982935  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Complemental strand, 847975 - 847918
Alignment:
Q  117 attttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtcc 174  Q
    |||||||||||||||||||||  |||||||| |||| || ||| ||||||||| ||||    
T  847975 attttctcaaattattagcggcatcggcgtgtcagtgtctgtgtcgtgtccggggtcc 847918  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 36635349 - 36635296
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccgg 169  Q
    ||||||||||||||||||| ||||| |||||| |||| |||| | |||||||||    
T  36635349 gattttctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccgg 36635296  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 18844423 - 18844467
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtccgacaccga 80  Q
    |||||||||||||||||| |||| ||||| | |||||||||||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtccgacaccga 18844467  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  36 ctatgaagcacggacactcctcgaattagccatgtcc 72  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 496 - 556
Alignment:
Q  116 gattttctcaaattattagcggtgtcggcgtgccagtatccgtgccgtgtccggagtccgt 176  Q
    |||||| ||||||||||||| ||||||||||  |||| |||||| ||||| ||| ||||||    
T  496 gattttttcaaattattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgt 556  T

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Target: scaffold0450 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 64
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  36 ctatgaagcacggacactcctcgaattag 64  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

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Target: scaffold0279 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 17903 - 17935
Alignment:
Q  115 cgattttctcaaattattagcggtgtcggcgtg 147  Q
    |||||||||||||||||||||||||| ||||||    
T  17903 cgattttctcaaattattagcggtgtaggcgtg 17935  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 46778 - 46731
Alignment:
Q  34 aactatgaagcacggacactcctcgaattagccatgtccgacaccgaca 82  Q
    ||||||||||||||||||||||||| ||||| | ||| |||||||||||    
T  46778 aactatgaagcacggacactcctcggattaggcgtgt-cgacaccgaca 46731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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