View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12184_high_7 (Length: 300)
Name: NF12184_high_7
Description: NF12184
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12184_high_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 47216072 - 47216372
Alignment:
| Q |
1 |
ttagtttgcttctaattctttccaacactataaataacatctgtaaacaatttaagcttagttcgtataatgatctaacactcttatcgtagttcggaaa |
100 |
Q |
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| T |
47216072 |
ttagtttgcttctaattctttccaacactataaataacatctgtaaacaatttaagcttagttcggataatgatctagcactcttatcgtagttcggaaa |
47216171 |
T |
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| Q |
101 |
accttaccttgtatttatgaaattcacttcgacagtcatgcttcggtcaacaactgacaatcaaaccagta----aaacaatcaaatgcctccccttgaa |
196 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||| |
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| T |
47216172 |
accttaccttgtttttatgaaattcacttcgactgtcatgcttcggt---caactgacaatccaaccagtaaaacaaacaatcaaatgcctcaccttgaa |
47216268 |
T |
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| Q |
197 |
gcaattcgtttggagtgttttgtccattcgtcctaccatcttgactttaatttttgactatttgtgtatctgtacacaaaacttaagttgcgtaccgtag |
296 |
Q |
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|| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47216269 |
gccagtcgtttggagtgttttgtccattcatcctaccatcttgactttaatttttgactatttgtgtatctgtacacaaaacttaagttgcgtaccgtag |
47216368 |
T |
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| Q |
297 |
accc |
300 |
Q |
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|||| |
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| T |
47216369 |
accc |
47216372 |
T |
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