View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12185_high_3 (Length: 433)
Name: NF12185_high_3
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12185_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 19768624 - 19768956
Alignment:
| Q |
16 |
cagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttattcttggcaggttatt |
115 |
Q |
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| T |
19768624 |
cagattttagtttctaacatgttaaaattaagttatatcaattaactcatgtactgatgcctctaaaactatctgcattttttattcttggcaggttatt |
19768723 |
T |
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| Q |
116 |
ggaagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggcaggggaggggaaccttaaatcatgtgcaaactg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
19768724 |
ggaagaaaatggtgcatgttgtttagccattatcgttgtggaacctatccgtcaatgaatttgaggca-gggagaggaaccttaaatcatgtgcaaactg |
19768822 |
T |
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| Q |
216 |
agaaggagaaatttgagaagctga-ttttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctt |
314 |
Q |
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|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19768823 |
agaaggagaaatttgagaagctgattttttttttagcttgaatctgacggagaaaggttcttatgggtaaattttcttcttccacttttatttgtttctt |
19768922 |
T |
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| Q |
315 |
tgtcatctcttttgctatagaagaaactataaca |
348 |
Q |
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| T |
19768923 |
tctcatctattttgctatagaagaaactataaca |
19768956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 196 - 414
Target Start/End: Original strand, 29199150 - 29199367
Alignment:
| Q |
196 |
cttaaatcatgtgcaaactgagaaggagaaatttgagaagctgattttgtttgagcttgaatctgacggagaaaggttcttatgggtaaattttcttctt |
295 |
Q |
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| T |
29199150 |
cttaaatcatgtgcaaaatgagaaggagaaatttgagaagctgattttgtttgaatttgaatctgacggagaaaggttcttatggataaagtttcttctt |
29199249 |
T |
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| Q |
296 |
ccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctcttgagattt |
395 |
Q |
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| T |
29199250 |
ccacttttatttgtttctttctcatctattttgctatagaagaaactagaacagttggatcgtcatgttctcttattcata-ttttttctctttagattt |
29199348 |
T |
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| Q |
396 |
atctatattgaaattgttc |
414 |
Q |
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| T |
29199349 |
atctatattgaaattgttc |
29199367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 29200163 - 29200212
Alignment:
| Q |
16 |
cagatttcagtttctaacatgttaaaattaagttatatcaattaactcat |
65 |
Q |
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| T |
29200163 |
cagatttcagtttctaacatgttaaaaataagttatatcaattaactcat |
29200212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 6e-38; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 37616663 - 37616579
Alignment:
| Q |
16 |
cagatttcagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat |
100 |
Q |
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| T |
37616663 |
cagatttaagtttctaacatgttaaaattaagttatatcaattaactcatgtactcatgcctctaaaactatctgcattttttat |
37616579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 414
Target Start/End: Complemental strand, 25901225 - 25901101
Alignment:
| Q |
289 |
tcttcttccacttttatttgtttctttgtcatctcttttgctatagaagaaactataacagttggatcttcatgttctcttattcatannnnnnnctctt |
388 |
Q |
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||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| || || ||| |||||||||||||||||||||| ||||| |
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| T |
25901225 |
tcttcttccacttttatttgtttctttctcatctattttgccatagaagaaactagaatagatgggtcttcatgttctcttattcata-ctttttctctt |
25901127 |
T |
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| Q |
389 |
gagatttatctatattgaaattgttc |
414 |
Q |
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| T |
25901126 |
gagatttatctacattgaaattgttc |
25901101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 5478209 - 5478268
Alignment:
| Q |
172 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga |
231 |
Q |
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|||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
5478209 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
5478268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 50227416 - 50227374
Alignment:
| Q |
270 |
ggttcttatgggtaaattttcttcttccacttttatttgtttc |
312 |
Q |
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| T |
50227416 |
ggttcttatgggtaaagtttcttctttcacttttatttgtttc |
50227374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 1659846 - 1659810
Alignment:
| Q |
17 |
agatttcagtttctaacatgttaaaattaagttatat |
53 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
1659846 |
agatttcagtttctaacatgttaaaatcaagttatat |
1659810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 32226123 - 32226087
Alignment:
| Q |
17 |
agatttcagtttctaacatgttaaaattaagttatat |
53 |
Q |
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| T |
32226123 |
agatttcagtttctaacatgttaaaatcaagttatat |
32226087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 2685103 - 2685044
Alignment:
| Q |
172 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga |
231 |
Q |
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| T |
2685103 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
2685044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 45008528 - 45008469
Alignment:
| Q |
172 |
gaatttgaggcaggggaggggaaccttaaatcatgtgcaaactgagaaggagaaatttga |
231 |
Q |
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|||||||||| ||||||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
45008528 |
gaatttgagggaggggagtggaacctcaaatcatgtgcaaaatgagaaggagaaatttga |
45008469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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