View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12185_high_4 (Length: 401)

Name: NF12185_high_4
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12185_high_4
NF12185_high_4
[»] chr2 (1 HSPs)
chr2 (10-382)||(33651795-33652170)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 33651795 - 33652170
Alignment:
Q  10 agaagcagagacattcatatttaccaaattatttcttaactatagtggatgatcatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33651795 agaagcagagacattcatatttaccaaattatttcttaactatagtggatgattatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaa 33651894  T
Q  110 tttaatttgataataatgnnnnnnnn-aaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggttttctgatatatgtaggacatgctatag 208  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33651895 tttaatttgataataatgtttttttttaaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggttttctgatatatgtaggacatgctatag 33651994  T
Q  209 aatgaacttggttggtttcaactttttatgnnnnnnnacgacaaggacaataatcacaacatgttatgttttaacttgt-aaattatattnnnnnnnntc 307  Q
    ||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||    
T  33651995 aatgaactttgttggtttcaactttttatgtttttttacgacaaggacaataatcacaacatgttatgttttaacttgtaaaattatattaaaaaaaatc 33652094  T
Q  308 atagtttagttttctgttaca---tagtagtacaaaatcgccaacttggttttagtttgtcttctttcatgtgtttcc 382  Q
      |||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33652095 --agtttagttttctgttacatagtagtagtacataatcgccaacttggttttagtttgtcttctttcatgtgtttcc 33652170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University