View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12185_high_7 (Length: 222)
Name: NF12185_high_7
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12185_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 39290243 - 39290414
Alignment:
| Q |
1 |
gttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgtta |
100 |
Q |
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| T |
39290243 |
gttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgtta |
39290342 |
T |
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| Q |
101 |
ctccttctctgtttgcttgaaacactgtaaaaatttattaagttacttttgtttacctatagtagaaactta |
172 |
Q |
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| T |
39290343 |
ctccttctctgtttgcttgaaacactgtaaaaatttatttagttacttttgtttacctatagtagaaactta |
39290414 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 39297123 - 39297221
Alignment:
| Q |
1 |
gttagagcttgtaacaaggctaagattcctgcatttggtccaatttgggactcttgaatggctcaaaattacacaaaattttaaggcaagtaatttgtta |
100 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| || || || ||| ||| || ||||||||||||||||||| |
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| T |
39297123 |
gttagagcttgtaacaaggctaaaattcctgcttttggtccaatttgggactcttgaaaggttctaa---acaaaaacttgtaaggcaagtaatttgtta |
39297219 |
T |
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