View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12185_low_4 (Length: 401)

Name: NF12185_low_4
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12185_low_4
NF12185_low_4
[»] chr2 (1 HSPs)
chr2 (10-382)||(33651795-33652170)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 382
Target Start/End: Original strand, 33651795 - 33652170
Alignment:
Q  10 agaagcagagacattcatatttaccaaattatttcttaactatagtggatgatcatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaa 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  33651795 agaagcagagacattcatatttaccaaattatttcttaactatagtggatgattatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaa 33651894  T
Q  110 tttaatttgataataatgnnnnnnnn-aaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggttttctgatatatgtaggacatgctatag 208  Q
    ||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33651895 tttaatttgataataatgtttttttttaaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggttttctgatatatgtaggacatgctatag 33651994  T
Q  209 aatgaacttggttggtttcaactttttatgnnnnnnnacgacaaggacaataatcacaacatgttatgttttaacttgt-aaattatattnnnnnnnntc 307  Q
    ||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||||||        ||    
T  33651995 aatgaactttgttggtttcaactttttatgtttttttacgacaaggacaataatcacaacatgttatgttttaacttgtaaaattatattaaaaaaaatc 33652094  T
Q  308 atagtttagttttctgttaca---tagtagtacaaaatcgccaacttggttttagtttgtcttctttcatgtgtttcc 382  Q
      |||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33652095 --agtttagttttctgttacatagtagtagtacataatcgccaacttggttttagtttgtcttctttcatgtgtttcc 33652170  T

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