View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12185_low_6 (Length: 291)
Name: NF12185_low_6
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12185_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 51856304 - 51856549
Alignment:
| Q |
28 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
127 |
Q |
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| T |
51856304 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
51856403 |
T |
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| Q |
128 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttgagact |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856404 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
51856503 |
T |
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| Q |
228 |
gattttcatctctaattttcgtctnnnnnnncagcaatataagagt |
273 |
Q |
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| T |
51856504 |
gattttcatctctaattttcgtctaaaaaaacagcaatataagagt |
51856549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 28 - 273
Target Start/End: Original strand, 8945490 - 8945735
Alignment:
| Q |
28 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
127 |
Q |
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| T |
8945490 |
taagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaagaattcttattatgtataataatgttgctacttttagttaaattgatttt |
8945589 |
T |
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| Q |
128 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttgagact |
227 |
Q |
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| T |
8945590 |
atttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttgagact |
8945689 |
T |
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| Q |
228 |
gattttcatctctaattttcgtctnnnnnnncagcaatataagagt |
273 |
Q |
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| T |
8945690 |
gattttcatctataattttcgtctaaaaaaacagcaatataagagt |
8945735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 123 - 239
Target Start/End: Complemental strand, 128536 - 128421
Alignment:
| Q |
123 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcgtccaaaataacagtaatagttaacattacattgaactttg |
222 |
Q |
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||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||| ||||||||||||||| | |||||||||||||| |
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| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
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| Q |
223 |
agactgattttcatctc |
239 |
Q |
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||||| ||||||||||| |
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| T |
128437 |
agactaattttcatctc |
128421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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