View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12185_low_8 (Length: 259)

Name: NF12185_low_8
Description: NF12185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12185_low_8
NF12185_low_8
[»] chr7 (22 HSPs)
chr7 (63-210)||(31742642-31742789)
chr7 (18-62)||(41617985-41618029)
chr7 (18-65)||(46491692-46491739)
chr7 (20-62)||(30581272-30581314)
chr7 (30-63)||(34809005-34809038)
chr7 (18-63)||(41358975-41359020)
chr7 (18-62)||(767136-767180)
chr7 (26-62)||(17114145-17114181)
chr7 (18-62)||(41617192-41617236)
chr7 (18-62)||(41965781-41965825)
chr7 (18-62)||(42818557-42818601)
chr7 (24-71)||(3314946-3314993)
chr7 (26-65)||(41965109-41965148)
chr7 (18-63)||(24873750-24873795)
chr7 (26-63)||(24874590-24874627)
chr7 (18-63)||(28007156-28007201)
chr7 (24-57)||(36611556-36611589)
chr7 (18-62)||(767970-768014)
chr7 (16-56)||(7329070-7329110)
chr7 (18-62)||(36611498-36611542)
chr7 (24-60)||(44876944-44876980)
chr7 (23-63)||(46491009-46491049)
[»] chr1 (11 HSPs)
chr1 (18-62)||(27746162-27746206)
chr1 (18-63)||(26240875-26240920)
chr1 (24-62)||(16449555-16449593)
chr1 (24-62)||(16459129-16459167)
chr1 (24-63)||(24848436-24848475)
chr1 (24-63)||(26240113-26240152)
chr1 (24-63)||(27745555-27745594)
chr1 (24-62)||(24847783-24847821)
chr1 (13-62)||(12449311-12449360)
chr1 (18-62)||(31109239-31109283)
chr1 (18-62)||(31116688-31116732)
[»] chr5 (12 HSPs)
chr5 (20-62)||(29595600-29595642)
chr5 (24-62)||(23257319-23257357)
chr5 (24-62)||(27345929-27345967)
chr5 (18-62)||(24565573-24565617)
chr5 (18-62)||(24606609-24606653)
chr5 (23-63)||(39936254-39936294)
chr5 (18-62)||(39937910-39937954)
chr5 (18-62)||(40372164-40372208)
chr5 (24-63)||(2029057-2029096)
chr5 (24-62)||(23253496-23253534)
chr5 (18-63)||(35524121-35524166)
chr5 (18-63)||(39466884-39466929)
[»] chr4 (16 HSPs)
chr4 (18-63)||(34941501-34941546)
chr4 (20-62)||(51386456-51386498)
chr4 (24-63)||(14527586-14527625)
chr4 (13-63)||(13925648-13925698)
chr4 (24-62)||(24666129-24666167)
chr4 (25-63)||(26354243-26354281)
chr4 (24-62)||(42792775-42792813)
chr4 (18-63)||(34450814-34450859)
chr4 (25-62)||(52129421-52129458)
chr4 (18-62)||(6057003-6057047)
chr4 (18-62)||(13924793-13924837)
chr4 (18-58)||(18363657-18363697)
chr4 (27-63)||(24666865-24666901)
chr4 (26-62)||(25055109-25055145)
chr4 (18-58)||(36599231-36599271)
chr4 (18-62)||(47157383-47157427)
[»] chr6 (2 HSPs)
chr6 (19-63)||(5312240-5312284)
chr6 (18-62)||(16718998-16719042)
[»] chr3 (16 HSPs)
chr3 (24-62)||(20807937-20807975)
chr3 (24-61)||(54308454-54308491)
chr3 (18-62)||(15287567-15287611)
chr3 (19-63)||(53346501-53346545)
chr3 (19-63)||(54753576-54753620)
chr3 (18-61)||(9830573-9830616)
chr3 (27-62)||(49350283-49350318)
chr3 (24-62)||(4706966-4707004)
chr3 (24-62)||(20808617-20808655)
chr3 (24-62)||(47571196-47571234)
chr3 (24-62)||(49349676-49349714)
chr3 (18-63)||(16076209-16076254)
chr3 (27-60)||(48626127-48626160)
chr3 (18-62)||(53503-53547)
chr3 (18-66)||(41419623-41419671)
chr3 (18-62)||(43454165-43454209)
[»] chr8 (10 HSPs)
chr8 (18-63)||(22632972-22633017)
chr8 (24-68)||(26847091-26847135)
chr8 (18-62)||(36403029-36403073)
chr8 (18-61)||(22632323-22632366)
chr8 (24-63)||(42094008-42094047)
chr8 (24-62)||(4402297-4402335)
chr8 (24-62)||(16911056-16911094)
chr8 (18-62)||(5434032-5434076)
chr8 (26-62)||(5434781-5434817)
chr8 (18-62)||(9277786-9277830)
[»] chr2 (9 HSPs)
chr2 (13-62)||(127033-127082)
chr2 (24-63)||(127745-127784)
chr2 (24-63)||(20606931-20606970)
chr2 (26-69)||(24394897-24394940)
chr2 (24-61)||(34595944-34595981)
chr2 (24-57)||(44297424-44297457)
chr2 (18-62)||(7754971-7755015)
chr2 (32-68)||(10365525-10365561)
chr2 (18-62)||(18537497-18537541)
[»] scaffold0627 (1 HSPs)
scaffold0627 (24-63)||(6463-6502)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 210
Target Start/End: Complemental strand, 31742789 - 31742642
Alignment:
Q  63 tgtaaaaacggaaaaatggtatctatatctttttgtcacagcctttttctcgataacttaccttttttaaaaccttgatcatttctctatccgttactct 162  Q
    |||||||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||||    
T  31742789 tgtaaaaacgaaaaaatggtatccatatctttttgtcgcagcctttttctcggtaacttaccttttttaaaaccttgatcatttctcattcctttactct 31742690  T
Q  163 tccacctcaactaccaaaccaatcttatatctcctaaggtactaacat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31742689 tccacctcaactaccaaaccaatcttatatctcctaaggtactaacat 31742642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41617985 - 41618029
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  41617985 tccactggtgagagacttaattggaccctcactctagaatccacc 41618029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 46491692 - 46491739
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacctgt 65  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||    
T  46491692 tccaccggtgagggacttagttgaaccctcaccctagaatccacctgt 46491739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 30581272 - 30581314
Alignment:
Q  20 cactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  30581272 cactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 34809005 - 34809038
Alignment:
Q  30 ggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||||||||||||||||||||||||||    
T  34809005 ggacttaattgaaccctcactctagaatccacct 34809038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 41358975 - 41359020
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||    
T  41358975 tccactggtgatggacttaattgatccctcaccctagaatccacct 41359020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 767180 - 767136
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  767180 tccaccggtgagggacttaattggaccctcaccctagaatccacc 767136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 17114181 - 17114145
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17114181 tgagggacttaattgaaccctcaccctagaatccacc 17114145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41617236 - 41617192
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41617236 tccaccggtgagggacttaattgatcactcactctagaatccacc 41617192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41965781 - 41965825
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  41965781 tccaccggtgagggacttaattggaccctcaccctagaatccacc 41965825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 42818557 - 42818601
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||    
T  42818557 tccaccggtgagggacttaattgaaccctcaccctagaattcacc 42818601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 3314993 - 3314946
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacctgtaaaaac 71  Q
    ||||||||||||||||||||||||||  ||||||||||| | ||||||    
T  3314993 ggtgagggacttaattgaaccctcaccgtagaatccacccgcaaaaac 3314946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Complemental strand, 41965148 - 41965109
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacctgt 65  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  41965148 tgagggacttaattggaccctcaccctagaatccacctgt 41965109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24873795 - 24873750
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||| |||||||| |||||| |||||||| |||||||||||||    
T  24873795 tccactgatgagggacctaattggaccctcaccctagaatccacct 24873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 63
Target Start/End: Original strand, 24874590 - 24874627
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  24874590 tgagggacctaattgaaccctcaccctagaatccacct 24874627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 28007201 - 28007156
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||    
T  28007201 tccaccggtgagggacttaattgctccctcaccctagaatccacct 28007156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 36611589 - 36611556
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaat 57  Q
    |||||||||||||||||||||||||| |||||||    
T  36611589 ggtgagggacttaattgaaccctcaccctagaat 36611556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 767970 - 768014
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||||||||||| |||||||| ||| ||||||||    
T  767970 tccaccggtgagggacttaattggaccctcaccctaaaatccacc 768014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 7329070 - 7329110
Alignment:
Q  16 gttccactggtgagggacttaattgaaccctcactctagaa 56  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  7329070 gttccaccagtgagggacttaattgaaccctcaccctagaa 7329110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 36611498 - 36611542
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||| || |||||||||||||||| ||||||||||||    
T  36611498 tccaccggtgagagatttaattgaaccctcaccctagaatccacc 36611542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 44876944 - 44876980
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatcca 60  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  44876944 ggtgagggacttaattgatccctcaccctagaatcca 44876980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 46491049 - 46491009
Alignment:
Q  23 tggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||| |||||||||||||||||||| ||| |||||||||    
T  46491049 tggtgatggacttaattgaaccctcaccctacaatccacct 46491009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27746162 - 27746206
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  27746162 tccactggtgagggacttaattgaaccctcacgctagaatccacc 27746206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 26240875 - 26240920
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  26240875 tccaccggtgagggacttaattgaaccctcaccctagaatccacct 26240920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 16449593 - 16449555
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16449593 ggtgagggacttaattgaaccctcaccctagaatccacc 16449555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 16459167 - 16459129
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  16459167 ggtgagggacttaattgaaccctcaccctagaatccacc 16459129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 24848436 - 24848475
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||||||| |||||||||| |||||||||||||    
T  24848436 ggtgagggacttaatagaaccctcaccctagaatccacct 24848475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 26240152 - 26240113
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  26240152 ggtgagggacttaattgatccctcaccctagaatccacct 26240113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 27745594 - 27745555
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  27745594 ggtgagggacttaattgaaccctcaccttagaatccacct 27745555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 24847821 - 24847783
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  24847821 ggtgagggacttaatagaaccctcaccctagaatccacc 24847783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 12449311 - 12449360
Alignment:
Q  13 tgtgttccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||| ||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  12449311 tgtggtccaccggtgagggacttaattgatccctcaccctaaaatccacc 12449360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 31109283 - 31109239
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||| |||||| |||||||| ||||||||||||    
T  31109283 tccaccggtgagggacctaattggaccctcaccctagaatccacc 31109239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 31116688 - 31116732
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||| |||||| |||||||| ||||||||||||    
T  31116688 tccaccggtgagggacctaattggaccctcaccctagaatccacc 31116732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 29595600 - 29595642
Alignment:
Q  20 cactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  29595600 cactggtgagggacttaattgaaccctcacgctagaatccacc 29595642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 23257357 - 23257319
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  23257357 ggtgagggacttaattggaccctcactctagaatccacc 23257319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 27345929 - 27345967
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  27345929 ggtgagggacttaattgaaccctcaccctagaatccacc 27345967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24565617 - 24565573
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  24565617 tccaccggtgagggatttaattgaaccctcaccctagaatccacc 24565573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24606653 - 24606609
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||    
T  24606653 tccaccggtgagggatttaattgaaccctcaccctagaatccacc 24606609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 39936294 - 39936254
Alignment:
Q  23 tggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  39936294 tggtgagggacttaattgaaccctcaccttagaatccacct 39936254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39937910 - 39937954
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||||    
T  39937910 tccaccggtgagggacttaactgaaccctcaccctagaatccacc 39937954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40372164 - 40372208
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  40372164 tccaccggtgaggaacttaattgaaccctcaccctagaatccacc 40372208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 2029057 - 2029096
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  2029057 ggtgagggacttaattgagccctcaccctagaatccacct 2029096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 23253496 - 23253534
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  23253496 ggtgagggacttaattggaccctcaccctagaatccacc 23253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 35524166 - 35524121
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||||| ||||  |||||||||||||    
T  35524166 tccaccggtgagggacttaattgaactctcatcctagaatccacct 35524121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 39466929 - 39466884
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| ||||||||||||||||| |||||||| ||||||| |||||    
T  39466929 tccaccggtgagggacttaattggaccctcaccctagaattcacct 39466884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34941546 - 34941501
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  34941546 tccactagtgagggacttaattgaaccctcaccctagaatccacct 34941501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 51386498 - 51386456
Alignment:
Q  20 cactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  51386498 cactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 14527586 - 14527625
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  14527586 ggtgagggacttaattgatccctcaccctagaatccacct 14527625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 13925648 - 13925698
Alignment:
Q  13 tgtgttccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||| ||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  13925648 tgtggtccaccggtgagggacttagttgatccctcactttagaatccacct 13925698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 24666167 - 24666129
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  24666167 ggtgagggacttaattgatccctcaccctagaatccacc 24666129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 26354243 - 26354281
Alignment:
Q  25 gtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  26354243 gtgagggacttaattgaaccctcaccctagaacccacct 26354281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 42792813 - 42792775
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  42792813 ggtgagggacttaattggaccctcaccctagaatccacc 42792775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34450859 - 34450814
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||| ||||||| ||||||| |||||    
T  34450859 tccaccggtgagggacttaattgatccctcaccctagaattcacct 34450814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 52129458 - 52129421
Alignment:
Q  25 gtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||  |||||||||||    
T  52129458 gtgagggacttaattgaaccctcaccttagaatccacc 52129421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 6057003 - 6057047
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||||||| | |||||||||| ||||||||||||    
T  6057003 tccaccggtgagggacttagtagaaccctcaccctagaatccacc 6057047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 13924837 - 13924793
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||| |||||||| ||||||| ||||||||||||    
T  13924837 tccaccggtgagggatttaattgagccctcaccctagaatccacc 13924793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 18363657 - 18363697
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatc 58  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  18363657 tccaccggtgaggaacttaattgaaccctcaccctagaatc 18363697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 24666865 - 24666901
Alignment:
Q  27 gagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  24666865 gagggacttaattgaaccctcaccctataatccacct 24666901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 25055145 - 25055109
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  25055145 tgaggaacttaattgaaccctcaccctagaatccacc 25055109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 36599271 - 36599231
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatc 58  Q
    ||||| ||||||| |||||||||||||||||| ||||||||    
T  36599271 tccaccggtgaggaacttaattgaaccctcaccctagaatc 36599231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 47157383 - 47157427
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||| |||||||||||||||| ||||||| ||||    
T  47157383 tccaccggtgagggatttaattgaaccctcaccctagaattcacc 47157427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5312284 - 5312240
Alignment:
Q  19 ccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||||||||||||||||| |||||| |||||    
T  5312284 ccactggtgagggacttaattgaaccctcactgtagaattcacct 5312240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 16718998 - 16719042
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||||||| || |||| ||||||||||||    
T  16718998 tccaccggtgagggacttaattgatccgtcaccctagaatccacc 16719042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 20807975 - 20807937
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  20807975 ggtgagggacttaattgaaccctcaccctagaatccacc 20807937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 54308491 - 54308454
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccac 61  Q
    |||||||||||||||||||||||||| |||||||||||    
T  54308491 ggtgagggacttaattgaaccctcaccctagaatccac 54308454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 15287611 - 15287567
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||||    
T  15287611 tccaccggtgagggacttaattggaccctcaccctagaatccacc 15287567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 53346501 - 53346545
Alignment:
Q  19 ccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||| ||||||||||||||||||||||||||| |||||| |||||    
T  53346501 ccaccggtgagggacttaattgaaccctcactgtagaattcacct 53346545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 54753620 - 54753576
Alignment:
Q  19 ccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||||||||||||||||  |||||| |||||    
T  54753620 ccactggtgagggacttaattgaaccctcaccgtagaattcacct 54753576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9830616 - 9830573
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccac 61  Q
    ||||| |||||||||||||||||||||||||| | |||||||||    
T  9830616 tccaccggtgagggacttaattgaaccctcacccgagaatccac 9830573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 62
Target Start/End: Original strand, 49350283 - 49350318
Alignment:
Q  27 gagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||||||||||| ||||||||||||    
T  49350283 gagggacttaattgaaccctcaccctagaatccacc 49350318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 4706966 - 4707004
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4706966 ggtgagggacttaatagaaccctcaccctagaatccacc 4707004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 20808617 - 20808655
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  20808617 ggtgagggacttacttgaaccctcaccctagaatccacc 20808655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 47571234 - 47571196
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  47571234 ggtgagggacttaattgatccctcaccctagaatccacc 47571196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 49349714 - 49349676
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  49349714 ggtgagggacttaattgatccctcaccctagaatccacc 49349676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 16076254 - 16076209
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||| ||||||||||| |||||| |||||||| |||||||||||||    
T  16076254 tccattggtgagggacctaattggaccctcaccctagaatccacct 16076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 48626127 - 48626160
Alignment:
Q  27 gagggacttaattgaaccctcactctagaatcca 60  Q
    ||||||||||||||||||||||| ||||||||||    
T  48626127 gagggacttaattgaaccctcaccctagaatcca 48626160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 53547 - 53503
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||| ||||||| |||||  |||||||||||    
T  53547 tccactggtgagggacttgattgaactctcaccatagaatccacc 53503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41419623 - 41419671
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacctgta 66  Q
    ||||| |||||||||| ||||||  ||||||| ||||||||||||||||    
T  41419623 tccaccggtgagggacctaattggcccctcacactagaatccacctgta 41419671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43454165 - 43454209
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||| |||||| |||||||| ||||||||||||    
T  43454165 tccacaggtgagggacctaattggaccctcaccctagaatccacc 43454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 22632972 - 22633017
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||||    
T  22632972 tccaccggtgagggacttaattgatccctcaccctagaatccacct 22633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 26847135 - 26847091
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacctgtaaa 68  Q
    ||||||||||||||||| |||||||| ||||||||||||| ||||    
T  26847135 ggtgagggacttaattggaccctcaccctagaatccacctctaaa 26847091  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 36403029 - 36403073
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||    
T  36403029 tccaccggtgagggacctaattggaccctcactctagaatccacc 36403073  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 22632366 - 22632323
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccac 61  Q
    ||||| |||||||||||||||||| ||||||| |||||||||||    
T  22632366 tccaccggtgagggacttaattgatccctcaccctagaatccac 22632323  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 42094047 - 42094008
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||| ||||||| |||||||||||||    
T  42094047 ggtgagggacttaattgatccctcaccctagaatccacct 42094008  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 4402297 - 4402335
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  4402297 ggtgagggacttaatagaaccctcaccctagaatccacc 4402335  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 16911056 - 16911094
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  16911056 ggtgagggacttaattgagccctcaccctagaatccacc 16911094  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 5434076 - 5434032
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||| ||||||||||| |||||||| ||||||||||||    
T  5434076 tccaccggtgaaggacttaattggaccctcaccctagaatccacc 5434032  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 5434781 - 5434817
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||||||||||||| || ||||||||||||||||||    
T  5434781 tgagggacttaattggactctcactctagaatccacc 5434817  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9277786 - 9277830
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||||    
T  9277786 tccattggtgagggacttaattgctccctcaccctagaatccacc 9277830  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 127082 - 127033
Alignment:
Q  13 tgtgttccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    |||| ||||||| ||||||||||| |||||||||||| ||||||||||||    
T  127082 tgtggtccactgatgagggacttagttgaaccctcaccctagaatccacc 127033  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 127745 - 127784
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  127745 ggtgaaggacttaattgaaccctcaccctagaatccacct 127784  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Original strand, 20606931 - 20606970
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  20606931 ggtgagggacttaattgaaccctcaccctagaattcacct 20606970  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 24394897 - 24394940
Alignment:
Q  26 tgagggacttaattgaaccctcactctagaatccacctgtaaaa 69  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||    
T  24394897 tgagggacttaattgatcccccactctagaatccacctataaaa 24394940  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 34595944 - 34595981
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccac 61  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  34595944 ggtgagggatttagttgaaccctcactctagaatccac 34595981  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 44297424 - 44297457
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaat 57  Q
    |||||||||||||||||||||||||| |||||||    
T  44297424 ggtgagggacttaattgaaccctcaccctagaat 44297457  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 7754971 - 7755015
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| ||||| |||||||||||| ||||||| ||||||||||||    
T  7754971 tccaccggtgaaggacttaattgatccctcaccctagaatccacc 7755015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 10365525 - 10365561
Alignment:
Q  32 acttaattgaaccctcactctagaatccacctgtaaa 68  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  10365525 acttaattgatccctcaccctagaatccacctgtaaa 10365561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18537497 - 18537541
Alignment:
Q  18 tccactggtgagggacttaattgaaccctcactctagaatccacc 62  Q
    ||||| |||||||||||||||||||||||||   |||||||||||    
T  18537497 tccaccggtgagggacttaattgaaccctcatcatagaatccacc 18537541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 6502 - 6463
Alignment:
Q  24 ggtgagggacttaattgaaccctcactctagaatccacct 63  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  6502 ggtgagggacttaattgaaccctcaccctagaacccacct 6463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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