View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12186_high_4 (Length: 355)
Name: NF12186_high_4
Description: NF12186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12186_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 340
Target Start/End: Complemental strand, 38892684 - 38892362
Alignment:
| Q |
19 |
tcactgttaaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaag |
118 |
Q |
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| T |
38892684 |
tcactgttaaatctaatccattataagctaatatatttatccacacacacgtgtaatgttaaactagcaatgcaaatgtagaacagagaagagagacaag |
38892585 |
T |
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| Q |
119 |
tgaaaagtgagatttcaaattgttggatttaagtttgagtgattagttctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacata |
218 |
Q |
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| T |
38892584 |
tgaaaagtgagatttcaaattgttgggattaagtttgagtgattaattctacatcaattatgaatagacaaaacgttgaatatatatgagatgtgacata |
38892485 |
T |
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| Q |
219 |
tataca-taatgttttaaggtttttagcgaagatatgatgtctccatcgcttataatcataggtaattggtttgttgttgctttcagtgctccttcagac |
317 |
Q |
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| T |
38892484 |
tacacattaatgttttaaggttttgagcgaagatatgatgtctccatcgcttataatcataggtaattggttcgctgttgctttccgtgctccttcagac |
38892385 |
T |
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| Q |
318 |
cacccaacaactaatataagagc |
340 |
Q |
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||||||||||||||||||||||| |
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| T |
38892384 |
cacccaacaactaatataagagc |
38892362 |
T |
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