View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12186_low_2 (Length: 503)
Name: NF12186_low_2
Description: NF12186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12186_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 37 - 488
Target Start/End: Original strand, 30055025 - 30055495
Alignment:
| Q |
37 |
acagcgtattctacgatactattcagtattcggggttccacggaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055025 |
acagcgtattctacgatactattcagtattcggggttccacgaaaacctctttgtcaagaaactcgagagtgtggagtggagtggaatcatcgcgaagag |
30055124 |
T |
|
| Q |
137 |
acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055125 |
acaggattcgagagagtgattcggtgaaagtgtggatggagttgaagggtttggaagttaatctaagggttggaagatgctttgtgagatagttccatct |
30055224 |
T |
|
| Q |
237 |
tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataa----------------------tctgtcttctttt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30055225 |
tgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataatggaatctggtaaattgctgagtctgtcttctttt |
30055324 |
T |
|
| Q |
315 |
cagttctcttcttcttccttttgggtttgtgtggaacaagaatcattgctacagagtaaaatcgatcgagagtagcagaatgaatgataaggtcactgtt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30055325 |
cagttctcttcttcttccttttgggtttgtgtggaacaagaatcattgctacagagtaaaatcgatcgagagtagcagaatgaatgataaggtcactgtt |
30055424 |
T |
|
| Q |
415 |
cttggaactaataataatccggtttctctgcacttaaaccggttctaagaccggaacaacaggatgaatatgtg |
488 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30055425 |
cttggaac---taataatccggtttctctgcacttaaaccggttctaagaccggaacaacaggatgtatatgtg |
30055495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 8400489 - 8400584
Alignment:
| Q |
207 |
tggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtcatggataat |
302 |
Q |
| |
|
||||||||| |||||||||| | |||||||||||||||||| |||||||||||| ||||||| || |||||||| |||||||||| ||||||||| |
|
|
| T |
8400489 |
tggaagatgttttgtgagatggatccatcttgttgagagtacacaagtttgaaaaacttctttggttttcaagaaggagagaatgtgatggataat |
8400584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 5367737 - 5367622
Alignment:
| Q |
188 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
287 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || ||||| |
|
|
| T |
5367737 |
tggaacttaatctaagggttggtagatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5367638 |
T |
|
| Q |
288 |
aatgtcatggataatc |
303 |
Q |
| |
|
||||| ||||| |||| |
|
|
| T |
5367637 |
aatgtgatggagaatc |
5367622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 5362521 - 5362411
Alignment:
| Q |
188 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
287 |
Q |
| |
|
||||| |||||||||| ||||||| ||| |||| |||| ||||||| | | ||||||||||||||||||||||||||||| |||| ||| || ||||| |
|
|
| T |
5362521 |
tggaacttaatctaagagttggaatatggtttggtagattcttccatcgtttggagagtatgcaagtttgaaaagcttctttggtgtccaataaggagag |
5362422 |
T |
|
| Q |
288 |
aatgtcatgga |
298 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5362421 |
aatgtgatgga |
5362411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 5374285 - 5374181
Alignment:
| Q |
194 |
ttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagagaatgtc |
293 |
Q |
| |
|
|||||||||||||||||| ||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || |||||||||| |
|
|
| T |
5374285 |
ttaatctaagggttggaatatggtttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagagaatgtg |
5374186 |
T |
|
| Q |
294 |
atgga |
298 |
Q |
| |
|
||||| |
|
|
| T |
5374185 |
atgga |
5374181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 188 - 298
Target Start/End: Complemental strand, 5356089 - 5355979
Alignment:
| Q |
188 |
tggaagttaatctaagggttggaagatgctttgtgagatagttccatcttgttgagagtatgcaagtttgaaaagcttctttagtgttcaagaatgagag |
287 |
Q |
| |
|
||||| ||||||||||||||| ||||| |||| ||||| |||||||| || ||||||||| ||||||||||||||| ||| |||| || || ||||| |
|
|
| T |
5356089 |
tggaacttaatctaagggttgagagatgttttgggagattcttccatctagtggagagtatggaagtttgaaaagcttgtttggtgtctaataaggagag |
5355990 |
T |
|
| Q |
288 |
aatgtcatgga |
298 |
Q |
| |
|
||||| ||||| |
|
|
| T |
5355989 |
aatgtgatgga |
5355979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 8400655 - 8400695
Alignment:
| Q |
329 |
ttccttttgggtttgtgtggaacaagaatcattgctacaga |
369 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8400655 |
ttccttttgggtttgtgtggaagaagaatcattgctgcaga |
8400695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University