View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12186_low_3 (Length: 370)

Name: NF12186_low_3
Description: NF12186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12186_low_3
NF12186_low_3
[»] chr3 (14 HSPs)
chr3 (1-219)||(17003442-17003660)
chr3 (1-164)||(45261427-45261588)
chr3 (18-164)||(35455387-35455531)
chr3 (38-122)||(40344894-40344979)
chr3 (39-161)||(25294782-25294904)
chr3 (33-99)||(36659280-36659347)
chr3 (51-93)||(42279227-42279269)
chr3 (15-88)||(43105143-43105217)
chr3 (17-105)||(28695624-28695715)
chr3 (53-105)||(47860704-47860756)
chr3 (15-78)||(49983786-49983850)
chr3 (51-88)||(27828561-27828598)
chr3 (15-94)||(22923709-22923789)
chr3 (15-94)||(30041296-30041376)
[»] chr8 (12 HSPs)
chr8 (1-164)||(1445417-1445581)
chr8 (11-115)||(2520102-2520207)
chr8 (17-94)||(2207851-2207928)
chr8 (20-99)||(16890253-16890333)
chr8 (15-122)||(8251314-8251422)
chr8 (15-92)||(30653623-30653701)
chr8 (15-105)||(31658931-31659021)
chr8 (17-94)||(2152401-2152479)
chr8 (21-99)||(40314299-40314378)
chr8 (22-82)||(30870743-30870804)
chr8 (51-88)||(36408181-36408218)
chr8 (53-93)||(43594405-43594445)
[»] chr1 (18 HSPs)
chr1 (1-122)||(9851771-9851897)
chr1 (14-121)||(28470010-28470113)
chr1 (38-121)||(31152536-31152618)
chr1 (17-122)||(31181014-31181119)
chr1 (14-88)||(46443778-46443852)
chr1 (15-99)||(28165110-28165195)
chr1 (17-122)||(31003547-31003652)
chr1 (15-88)||(42454868-42454942)
chr1 (15-94)||(32715770-32715850)
chr1 (41-115)||(25130217-25130292)
chr1 (16-122)||(42745622-42745729)
chr1 (51-94)||(45691591-45691634)
chr1 (15-94)||(36437189-36437270)
chr1 (17-78)||(39150187-39150248)
chr1 (53-105)||(52336850-52336902)
chr1 (25-91)||(948144-948212)
chr1 (38-105)||(17988133-17988201)
chr1 (15-94)||(28723954-28724034)
[»] chr7 (8 HSPs)
chr7 (14-107)||(20949149-20949243)
chr7 (15-99)||(41508178-41508263)
chr7 (17-113)||(7307521-7307618)
chr7 (33-115)||(12485372-12485455)
chr7 (33-115)||(12506804-12506887)
chr7 (14-105)||(34470135-34470227)
chr7 (27-88)||(6549065-6549127)
chr7 (69-113)||(508603-508647)
[»] chr2 (18 HSPs)
chr2 (14-165)||(21794913-21795065)
chr2 (14-115)||(39063563-39063665)
chr2 (14-122)||(38214190-38214299)
chr2 (17-122)||(38496553-38496659)
chr2 (33-122)||(40664331-40664421)
chr2 (22-122)||(16781346-16781447)
chr2 (15-122)||(40503953-40504061)
chr2 (22-94)||(32872426-32872499)
chr2 (17-92)||(3268878-3268954)
chr2 (17-92)||(3269437-3269513)
chr2 (17-92)||(3269996-3270072)
chr2 (64-115)||(21229611-21229662)
chr2 (15-88)||(7011169-7011243)
chr2 (15-88)||(14200363-14200437)
chr2 (42-150)||(2761616-2761727)
chr2 (15-87)||(40442796-40442869)
chr2 (22-105)||(4015767-4015851)
chr2 (51-91)||(13027917-13027957)
[»] chr4 (9 HSPs)
chr4 (15-122)||(18838829-18838938)
chr4 (51-115)||(31707321-31707385)
chr4 (33-115)||(47231542-47231624)
chr4 (33-105)||(44720561-44720634)
chr4 (15-115)||(30615194-30615295)
chr4 (32-92)||(33721603-33721664)
chr4 (70-115)||(34320853-34320898)
chr4 (17-86)||(42312399-42312469)
chr4 (17-57)||(40413088-40413128)
[»] scaffold0088 (1 HSPs)
scaffold0088 (14-115)||(51350-51452)
[»] chr6 (10 HSPs)
chr6 (38-121)||(12143682-12143766)
chr6 (39-106)||(2950132-2950199)
chr6 (15-105)||(34837129-34837220)
chr6 (15-122)||(180418-180526)
chr6 (14-105)||(1856828-1856919)
chr6 (17-94)||(606607-606685)
chr6 (15-122)||(7926883-7926991)
chr6 (15-76)||(6657956-6658018)
chr6 (19-91)||(31116403-31116476)
chr6 (15-78)||(12453711-12453775)
[»] chr5 (11 HSPs)
chr5 (14-99)||(11983567-11983652)
chr5 (17-99)||(2225660-2225743)
chr5 (17-99)||(18705079-18705162)
chr5 (23-115)||(6688875-6688968)
chr5 (17-121)||(29948030-29948135)
chr5 (17-88)||(14417936-14418008)
chr5 (14-92)||(11691051-11691130)
chr5 (81-122)||(5289014-5289055)
chr5 (22-95)||(19296148-19296221)
chr5 (68-113)||(36477867-36477912)
chr5 (53-105)||(43442144-43442196)
[»] scaffold0024 (1 HSPs)
scaffold0024 (15-122)||(154418-154526)
[»] scaffold1809 (1 HSPs)
scaffold1809 (38-122)||(459-544)
[»] scaffold0836 (1 HSPs)
scaffold0836 (14-94)||(3099-3180)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17003660 - 17003442
Alignment:
Q  1 ctatttaagtttcctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatc 100  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17003660 ctatttaatgtttctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatatttgtaaaaatattcaaaaagttacattaatc 17003561  T
Q  101 aatgaatgcattggtattgatgnnnnnnnggttttgttgcttataataagcacccgagggagtattatggtagtgttactaataccttaaactatgactt 200  Q
    |||||||||||| |||||||||         |||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| ||||||||    
T  17003560 aatgaatgcattagtattgatgttttttttattttgttgcttataataaacaccggagggagtattatggtagtgttattaataccttaaattatgactt 17003461  T
Q  201 ttcatataagcacttaata 219  Q
    |||||||||||||||||||    
T  17003460 ttcatataagcacttaata 17003442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 45261427 - 45261588
Alignment:
Q  1 ctatttaagtttcctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatc 100  Q
    ||||||||  || ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  45261427 ctatttaatgtttctcttttaaatattagtgggtgtatttaatgtttcacaattttt-tgagggtatatttgtaaaaatgttcaaaaagttacattaatc 45261525  T
Q  101 aatgaatgcattggtattgatgnnnnnnnggttttgttgcttataataagcacccgagggagta 164  Q
    ||||||||||||||| ||||||       ||||||||||||||||||||| ||| |||||||||    
T  45261526 aatgaatgcattggttttgatg-ttttttggttttgttgcttataataaggaccggagggagta 45261588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35455387 - 35455531
Alignment:
Q  18 tttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggta 116  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||  ||| |||||| |||||||||||||||||| ||||||||| |||||||||||     
T  35455387 tttaaatattagtgagtgtatttaatgtttcacaattttttatgag--tatatttgtagaaatattcaaaaagttactttaatcaataaatgcattggtt 35455484  T
Q  117 ttgatgnnnnnnnggttttgttgcttataataagcacccgagggagta 164  Q
    ||||||        |||||||||||||||||||| ||| ||| |||||    
T  35455485 ttgatgtttttta-gttttgttgcttataataaggaccggagtgagta 35455531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 40344979 - 40344894
Alignment:
Q  38 tttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgatg 122  Q
    ||||||| |||||||||||| || ||||||| ||||||||||||||||||||||| || |||||||||| ||||||||| ||||||    
T  40344979 tttaatggttcacaattttttataagggtatatttgtaaaaatattcaaaaagttgcaataatcaatgactgcattggttttgatg 40344894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 39 - 161
Target Start/End: Complemental strand, 25294904 - 25294782
Alignment:
Q  39 ttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgatgnnnnnnnggttttgt 137  Q
    ||||||||||||||||||| ||||| |||| ||| |||||||||| ||| |||| ||||||| ||||| || |||||||||||||       ||||||||    
T  25294904 ttaatgtttcacaattttttatgagagtatgtttataaaaatatttaaatagtttcattaattaatgattgtattggtattgatg-ttttttggttttgt 25294806  T
Q  138 tgcttataataagcacccgaggga 161  Q
    | ||||||||||| ||| ||||||    
T  25294805 ttcttataataaggaccggaggga 25294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 36659280 - 36659347
Alignment:
Q  33 gtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||| |||||||||||| ||||||| || |||||||  ||||||||||||||||||||||||||||||    
T  36659280 gtgtatttaatgtttcataattttttattagggtatacttgtaaaaatattcaaaaagttacattaat 36659347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 42279269 - 42279227
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaagttac 93  Q
    ||||||||||||||||| |||||||||||||| ||||||||||    
T  42279269 aatttttatgagggtatatttgtaaaaatattaaaaaagttac 42279227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 43105217 - 43105143
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||| ||||||||||||| | ||| ||  ||||||| ||||||||||||||| |||||||||| |||||||||    
T  43105217 tcttttcaatattagtgggtatatttgatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 43105143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 28695624 - 28695715
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggt--atttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    |||| |||||||||   |||| |||||||||||||| ||||||| || ||  || |||||||||||||||||||||||||| |||| |||||    
T  28695624 tttttaatattagtaactgtggttaatgtttcacaactttttataagcgtgtatatttgtaaaaatattcaaaaagttacactaattaatga 28695715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 47860704 - 47860756
Alignment:
Q  53 tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||||||||||| || ||||||||||  |||||||||||||||| |||||    
T  47860704 tttttatgagggtatattagtaaaaatatctaaaaagttacattaattaatga 47860756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 49983786 - 49983850
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaa 78  Q
    |||||| ||||||||||||| | ||||||  ||||||| ||||||||||||||| ||||||||||    
T  49983786 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaaaa 49983850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 27828561 - 27828598
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  27828561 aatttttatgaaggtatatttgtaaaaatattcaaaaa 27828598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 22923709 - 22923789
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||||| ||||||||| ||| | ||||||   |||||| ||||||||| ||||| |||||||||||||  |||||||||||    
T  22923709 tctttttaatattagtaggtatatttaatacatcacaaatttttatgaaggtatatttgtaaaaatatataaaaagttaca 22923789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 30041376 - 30041296
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatt-tttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||||| ||||||||||| | | ||||||  ||||||| | ||||||||||||| ||| |||||| ||||||||| |||||    
T  30041376 tctttttaatattagtggttatatttaatacttcacaaatctttatgagggtatatttataaaaacattcaaaaaattaca 30041296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 1445417 - 1445581
Alignment:
Q  1 ctatttaagtttcctcttttaaatattagtgggtgtgtttaatgtttcacaattttta-tgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    ||||||||  || |||||||| ||||||||| |||| ||||||||||||||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||    
T  1445417 ctatttaatgtttctcttttagatattagtgagtgtatttaatgtttcacaatttttaatgaaggtatatttgtaaaagtattcaaaaaattacattaat 1445516  T
Q  100 caatgaatgcattggtattgatgnnnnnnnggttttgttgcttataataagcacccgagggagta 164  Q
    |||||||||||||| | ||||||       | |||||||||||||||||||  ||||||||||||    
T  1445517 caatgaatgcattgattttgatgattttttgtttttgttgcttataataaggtcccgagggagta 1445581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 2520207 - 2520102
Alignment:
Q  11 ttcctcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgc 109  Q
    ||||| |||||||||||| || | || |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||||     
T  2520207 ttccttttttaaatattattgagagtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagttacattaattaatgaatgt 2520108  T
Q  110 attggt 115  Q
    ||||||    
T  2520107 attggt 2520102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 2207851 - 2207928
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||| ||||||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2207851 tttttaatattaatgggtgtatttaatgcttcacaatttttatgagggtatatttgtaaaaatattcaaaaagttaca 2207928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 99
Target Start/End: Complemental strand, 16890333 - 16890253
Alignment:
Q  20 taaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||||||||||| || | |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  16890333 taaatattagtgagtttatttaatgtttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttacattaat 16890253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 8251314 - 8251422
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| |||||||||| || | ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||  |||| |||| ||||| || ||||    
T  8251314 tctttttaatattagtgagtttatttaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaaactacactaattaatgagtgtattg 8251413  T
Q  114 gtattgatg 122  Q
    || ||||||    
T  8251414 gttttgatg 8251422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 30653701 - 30653623
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    |||||| |||| ||||  |||| ||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  30653701 tctttttaatactagtttgtgtatttaatgtttcacaaatttttatgagggtatatttgtaaaattattcaaaaagtta 30653623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 31658931 - 31659021
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    |||||| |||| |||||| ||| ||||||| | || ||||||||||||| ||| |||||||||||||||||||| ||| | |||| |||||    
T  31658931 tctttttaatactagtggatgtatttaatgctgcataatttttatgaggatatatttgtaaaaatattcaaaaaattatactaattaatga 31659021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 2152401 - 2152479
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||| |||||||| | || | ||||||| |||||||||||| || ||||||| ||| ||||||||||||||||||||||    
T  2152401 tttttaatattagcgagtctatttaatgcttcacaattttttataagggtatatttataaaaatattcaaaaagttaca 2152479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 40314299 - 40314378
Alignment:
Q  21 aaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    ||||||| || | ||| |||||||||||| ||||||| |||| | ||| |||||||||||||| |||| |||||||||||    
T  40314299 aaatatttgtagatgtatttaatgtttcataattttttatgaagatatatttgtaaaaatatttaaaaggttacattaat 40314378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 30870804 - 30870743
Alignment:
Q  22 aatattagtgggtgtgtttaatgtttcacaat-ttttatgagggtatttttgtaaaaatatt 82  Q
    ||||||||||| | | |||||||||||||||| |||||| ||||||| ||||| ||||||||    
T  30870804 aatattagtggatatatttaatgtttcacaattttttataagggtatatttgtcaaaatatt 30870743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 36408218 - 36408181
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  36408218 aatttttatgagggtatatttgtaaaaacattcaaaaa 36408181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 43594445 - 43594405
Alignment:
Q  53 tttttatgagggtatttttgtaaaaatattcaaaaagttac 93  Q
    ||||||||||||||| || ||||||||||| ||||||||||    
T  43594445 tttttatgagggtatattagtaaaaatatttaaaaagttac 43594405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 9851897 - 9851771
Alignment:
Q  1 ctatttaagtttcctcttttaaatattagtgggtgtgtttaatgtttcacaat-ttttatgagggtatttttgtaaaaatattcaaaaagttacatta-- 97  Q
    ||||||||  || ||||||||||||||||||||| | |||||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||||      
T  9851897 ctatttaatgtttctcttttaaatattagtgggtatatttaatgtttcacagtattttataaaggtatatttgtaaaaatattcaaaaagttacattaat 9851798  T
Q  98 --atcaatgaatgcattggtattgatg 122  Q
      |||||||||||||||||||||||||    
T  9851797 atatcaatgaatgcattggtattgatg 9851771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 28470010 - 28470113
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcatt 112  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||||| |||| |     ||||||||||||||||| ||||||||||||||||||||    
T  28470010 ctcttttaaatatttgtgggtgtatttaatgtttcacaattttttatgagagtatgt-----aaaatattcaaaaagttgcattaatcaatgaatgcatt 28470104  T
Q  113 ggtattgat 121  Q
    ||| |||||    
T  28470105 ggttttgat 28470113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 31152536 - 31152618
Alignment:
Q  38 tttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgat 121  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| ||| | | | ||||||||| |||||    
T  31152536 tttaatgtttcaca-tttttatgagcgtatatttgtaaaaatattcaaaaagttacatgaattattaattgcattggttttgat 31152618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 31181119 - 31181014
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| |||||||| | |||| ||||||||||||||||||| ||| |||||||  ||||||||||||||||||||||| | | || ||||| |||||||||    
T  31181119 tttttaatattagcgagtgtatttaatgtttcacaattttctataagggtatacttgtaaaaatattcaaaaagttata-tgattaatgattgcattggt 31181021  T
Q  116 attgatg 122  Q
     ||||||    
T  31181020 tttgatg 31181014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 46443778 - 46443852
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    ||||||| ||| ||||||  ||| | ||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  46443778 ctctttttaatgttagtgaatgtatataatgtttcacaatttttatgtgggtatatttgtaaaaatattcaaaaa 46443852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 28165195 - 28165110
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||||| |||||| || | ||| |||||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| ||||    
T  28165195 tctttttaatattggtagatgtatttaatgtttcacaattttttataagggtatatttgtaaaaatattcaaaaaattacaataat 28165110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 31003652 - 31003547
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| |||||||| |  ||| |||||||||| |||||||| ||| | ||||| |||||||||||||||||||||||||| | || ||||| |||||||||    
T  31003652 tttttaatattagcgaatgtatttaatgtttaacaattttctataaaggtatatttgtaaaaatattcaaaaagttaca-tgattaatgattgcattggt 31003554  T
Q  116 attgatg 122  Q
     ||||||    
T  31003553 tttgatg 31003547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 42454942 - 42454868
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||| |||||||||| |||| ||||||| |||| ||||||| |||||||||| ||| ||||||||||||||||    
T  42454942 tctttttaatattagtgagtgtatttaatgcttcataattttttatgagggtatatttataaaaatattcaaaaa 42454868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 32715770 - 32715850
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||||| ||||||||||||| | ||||||  ||||||| ||||||||||| ||| |||||||||| ||||||||| |||||    
T  32715770 tcttttcaatattagtgggtatatttaatacttcacaaatttttatgaggatatatttgtaaaaacattcaaaaaattaca 32715850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 25130217 - 25130292
Alignment:
Q  41 aatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||||||||||||||| ||||| ||||| ||||||||| |||||||||| ||||| |||| ||| | |||||||||    
T  25130217 aatgtttcacaattttctatgatggtatatttgtaaaagtattcaaaaatttacaataattaataactgcattggt 25130292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 42745622 - 42745729
Alignment:
Q  16 cttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattgg 114  Q
    ||||| ||||||||||| ||| |||||||||||||||  || ||| ||||||| ||||||||||| || ||||||||||   ||| |||||  |||||||    
T  42745622 ctttttaatattagtggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttacgacaattaatgatagcattgg 42745721  T
Q  115 tattgatg 122  Q
    | ||||||    
T  42745722 ttttgatg 42745729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 45691634 - 45691591
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  45691634 aatttttatgagggtatatttgtaaaaatattcaaaaaattaca 45691591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 36437270 - 36437189
Alignment:
Q  15 tcttttaaatattagtggg-tgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||||| |||||||||||| ||| |||||||||||||||  || ||| ||||||| ||||||||||| || |||||||||||    
T  36437270 tctttttaatattagtgggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttaca 36437189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 78
Target Start/End: Complemental strand, 39150248 - 39150187
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaa 78  Q
    |||| ||||||| || |||| ||||||| ||||||| |||||||||||||| ||||||||||    
T  39150248 tttttaatattaatgagtgtatttaatgcttcacaacttttatgagggtatatttgtaaaaa 39150187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 52336902 - 52336850
Alignment:
Q  53 tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||||||||||| || ||||||||||  |||||||||||||||| |||||    
T  52336902 tttttatgagggtatattagtaaaaatatctaaaaagttacattaattaatga 52336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 948212 - 948144
Alignment:
Q  25 attagtgggtgtgtttaatgtttcacaa--tttttatgagggtatttttgtaaaaatattcaaaaagtt 91  Q
    |||||||| ||| ||||||||||| |||  ||||||| ||||||| |||| ||||||||| ||||||||    
T  948212 attagtggatgtatttaatgtttcgcaaattttttatcagggtatatttgaaaaaatatttaaaaagtt 948144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 17988201 - 17988133
Alignment:
Q  38 tttaatgtttcacaattt-ttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    |||||||||||||||||| |||||||| ||| ||||||||| ||||  |||||||| ||| || |||||    
T  17988201 tttaatgtttcacaatttattatgaggatatatttgtaaaattattttaaaagttatatttattaatga 17988133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 28724034 - 28723954
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||||| ||||||||||| | | ||||||  ||||||| ||||||||||||||| | |||||||  ||||||||| |||||    
T  28724034 tctttttaatattagtggttatatttaatacttcacaaatttttatgagggtatatctgtaaaagcattcaaaaaattaca 28723954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 20949149 - 20949243
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaat 107  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  20949149 ctcttttgaatattagtatgtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaatatttaaaaagttacattaatcaatgaat 20949243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 41508178 - 41508263
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| ||||    
T  41508178 tctttttaatattagtgggtgtatttaatgcttcacaattttttatgagggtatatttgtaaaaacattcaaaaagttacactaat 41508263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 7307521 - 7307618
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||| ||||||||||| ||| ||||||| |||||||||||| ||||| |||| ||||||||||||| ||||| |||||  |||| ||||| |||||||    
T  7307521 tttttaatattagtggatgtatttaatgcttcacaattttttatgagagtatatttgtaaaaatatgcaaaaggttaccctaattaatgattgcattg 7307618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 12485372 - 12485455
Alignment:
Q  33 gtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||| | ||| |||||||||||| |||| ||||| |||||||||    
T  12485372 gtgtatttattgtttcacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggt 12485455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 12506804 - 12506887
Alignment:
Q  33 gtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| |||| |||||||||||||| ||||||||||| ||||||| | ||| |||||||||||| |||| ||||| |||||||||    
T  12506804 gtgtatttattgtttcacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggt 12506887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 34470135 - 34470227
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||| |||||||||| |||| |||||| |||||||||||| || | |  ||| |||||||||||||||||||||||  |||||| |||||    
T  34470135 ctctttttaatattagtgagtgtatttaatatttcacaattttgtaagtgtttatatttgtaaaaatattcaaaaagtttaattaattaatga 34470227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 88
Target Start/End: Complemental strand, 6549127 - 6549065
Alignment:
Q  27 tagtgggtgtgtttaatgtttcacaat-ttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||| ||| |||||||||||||||| |||||| | ||||| || |||||||||||||||||    
T  6549127 tagtggatgtatttaatgtttcacaattttttattaaggtatattagtaaaaatattcaaaaa 6549065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 508603 - 508647
Alignment:
Q  69 tttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||||||||||||||||||||||| |||| ||| | |||||||    
T  508603 tttgtaaaaatattcaaaaagttacaataattaatcattgcattg 508647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 21794913 - 21795065
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttt--tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcat 111  Q
    ||||||| |||||||||| |||| |||||||||||||||||||  ||||||||||| ||||||||||||||||||||||| | ||||||||||| |  ||    
T  21794913 ctctttttaatattagtgtgtgtatttaatgtttcacaatttttttatgagggtatatttgtaaaaatattcaaaaagtttctttaatcaatgattatat 21795012  T
Q  112 tggtattgatgnnnnnnnggttttgttgcttataataagcacccgagggagtat 165  Q
    |||| ||||||       | ||||||| ||||||||||| ||| ||||||||||    
T  21795013 tggttttgatg-ttttttgattttgtttcttataataaggaccggagggagtat 21795065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 115
Target Start/End: Complemental strand, 39063665 - 39063563
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcatt 112  Q
    ||||||| |||||||||| |||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| | ||||||||||| || |||    
T  39063665 ctctttttaatattagtgtgtgtatttaatgtttcacaattttttatgaggttatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtatt 39063566  T
Q  113 ggt 115  Q
    |||    
T  39063565 ggt 39063563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 38214190 - 38214299
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcatt 112  Q
    ||||||| |||||||||  |||| ||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| | ||||||||||| || |||    
T  38214190 ctctttttaatattagtatgtgtatttaatgtttcacaattttttatgaggatatatttgtaaaaatattcaaaaagtttctttaatcaatgattgtatt 38214289  T
Q  113 ggtattgatg 122  Q
    ||| ||||||    
T  38214290 ggttttgatg 38214299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 38496553 - 38496659
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcaca-atttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| ||||||||| ||||| ||||||||||| || |||||||| ||||||| |||||||||||||||||||||||||| |||| |||||  ||||||||    
T  38496553 tttttaatattagtaggtgtatttaatgtttcgcacatttttatcagggtatatttgtaaaaatattcaaaaagttacactaattaatgatagcattggt 38496652  T
Q  116 attgatg 122  Q
     ||||||    
T  38496653 tttgatg 38496659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 122
Target Start/End: Original strand, 40664331 - 40664421
Alignment:
Q  33 gtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgatg 122  Q
    |||| |||||||||||||||||||| | |||||||| ||||||| ||||||||||||||| | ||||| ||||| || |||||| ||||||    
T  40664331 gtgtatttaatgtttcacaattttttacgagggtatatttgtaagaatattcaaaaagtttctttaattaatgattgtattggttttgatg 40664421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 16781346 - 16781447
Alignment:
Q  22 aatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattga 120  Q
    ||||||||| ||||| ||||||||||||| |||||| |||||||||| |||||| || |||||||||| ||| | |||| ||||| | ||||||| ||||    
T  16781346 aatattagtaggtgtatttaatgtttcaccatttttaatgagggtatatttgtataattattcaaaaaattagactaattaatgattacattggttttga 16781445  T
Q  121 tg 122  Q
    ||    
T  16781446 tg 16781447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 40503953 - 40504061
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| ||||||||| ||||  ||||||| ||||||| ||||||||||||||| | |||||||||||||||||  ||||| |||| ||||| | |||||    
T  40503953 tctttttaatattagtaggtgcatttaatgcttcacaactttttatgagggtatatctgtaaaaatattcaaaagattacactaattaatgattacattg 40504052  T
Q  114 gtattgatg 122  Q
     | ||||||    
T  40504053 attttgatg 40504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 32872426 - 32872499
Alignment:
Q  22 aatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    ||||||||||||| | ||||||  ||||||||||| ||||||||||| |||||||||| ||||||||| |||||    
T  32872426 aatattagtgggtatatttaatacttcacaattttttatgagggtatatttgtaaaaacattcaaaaaattaca 32872499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 3268878 - 3268954
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    |||| ||||||| | ||||| ||||| | ||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  3268878 tttttaatattaataggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagtta 3268954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 3269437 - 3269513
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    |||| ||||||| | ||||| ||||| | ||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  3269437 tttttaatattaataggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagtta 3269513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 3269996 - 3270072
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    |||| ||||||| | ||||| ||||| | ||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  3269996 tttttaatattaataggtgtatttaaggcttcacaactttttataagggtatatttgtaaaaatattcaaaaagtta 3270072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 115
Target Start/End: Original strand, 21229611 - 21229662
Alignment:
Q  64 gtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| |||||||||||||||||||||||||| |||| ||||| |||||||||    
T  21229611 gtatatttgtaaaaatattcaaaaagttacaataattaatgattgcattggt 21229662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 7011169 - 7011243
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||| ||||||||||||| | ||||||  ||||||| |||||||||| |||| |||||||||| |||||||||    
T  7011169 tcttttcaatattagtgggtatatttaatacttcacaaatttttatgagagtatatttgtaaaaacattcaaaaa 7011243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 14200437 - 14200363
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||| |||||||||| || | ||||||  ||||||| ||||||||||||||| |||||||||| |||||||||    
T  14200437 tcttttcaatattagtgagtatatttaatacttcacaaatttttatgagggtatatttgtaaaaacattcaaaaa 14200363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 2761616 - 2761727
Alignment:
Q  42 atgtttcacaattttt-atgagggtattt--ttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgatgnnnnnnnggttttgtt 138  Q
    |||||||||||||||| |||||| ||| |  || |||||||||||||||||||||| |||| ||||| ||||| ||| || |||       |||||||||    
T  2761616 atgtttcacaattttttatgaggatatatatttataaaaatattcaaaaagttacactaattaatgattgcatcggttttaatgtttttttggttttgtt 2761715  T
Q  139 gcttataataag 150  Q
     |||||||||||    
T  2761716 tcttataataag 2761727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 40442796 - 40442869
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaa 87  Q
    |||||| ||||||||| ||||  ||||||| ||||||| ||||||| ||||||| | | |||||||||||||||    
T  40442796 tctttttaatattagtaggtgcatttaatgcttcacaactttttataagggtatatctataaaaatattcaaaa 40442869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 4015851 - 4015767
Alignment:
Q  22 aatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||||| ||||  |||||||||||| ||||||| | |||||||| ||| || || |||||||||||||| | |||| |||||    
T  4015851 aatattagtaggtgcatttaatgtttcataatttttaacgagggtatatttatataattattcaaaaagttagactaattaatga 4015767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 13027917 - 13027957
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaagtt 91  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  13027917 aatttctatgaggatatatttgtaaaaatattcaaaaagtt 13027957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 18838829 - 18838938
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaat-attcaaaaagttacattaatcaatgaatgcatt 112  Q
    |||||| ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||| ||| |||||| ||||| | ||||    
T  18838829 tctttttaatattagtgggtgtatttaatgtttcacaattttttatgagggtatatttgtaaaaataattcaaaaatttatattaattaatgattacatt 18838928  T
Q  113 ggtattgatg 122  Q
    ||| ||||||    
T  18838929 ggttttgatg 18838938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 31707385 - 31707321
Alignment:
Q  51 aatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| || ||||||    
T  31707385 aatttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatgagtgtattggt 31707321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 115
Target Start/End: Complemental strand, 47231624 - 47231542
Alignment:
Q  33 gtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| ||||||| ||||||| ||||||||||| |||  |||||||||||||||||||||||||||||| ||||| | |||||||    
T  47231624 gtgtatttaatgattcacaactttttatgagg-tataattgtaaaaatattcaaaaagttacattaattaatgattccattggt 47231542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 44720634 - 44720561
Alignment:
Q  33 gtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    |||| ||||||||||  |||||||| |||||| ||| ||| ||||||||||||||| |||||||||||||||||    
T  44720634 gtgtatttaatgttttgcaattttttatgaggatatatttataaaaatattcaaaatgttacattaatcaatga 44720561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 30615194 - 30615295
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| ||||||||| | ||| |||||||||||| || ||||||| | ||| | |||||||||||||| |||||||||||  ||| ||| | |||||||    
T  30615194 tctttttaatattagtagatgtatttaatgtttcataattttttataaaggtgtatttgtaaaaatatttaaaaagttacaacaatgaataattgcattg 30615293  T
Q  114 gt 115  Q
    ||    
T  30615294 gt 30615295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 33721664 - 33721603
Alignment:
Q  32 ggtgtgtttaatgtttcacaat-ttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    ||||| |||||||||||||||| ||||||||| |||| ||||||||| |||| |||||||||    
T  33721664 ggtgtatttaatgtttcacaattttttatgagagtatgtttgtaaaattattgaaaaagtta 33721603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 34320853 - 34320898
Alignment:
Q  70 ttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    ||||||| |||||||||| ||||||||||| |||||||||||||||    
T  34320853 ttgtaaagatattcaaaaggttacattaattaatgaatgcattggt 34320898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 42312469 - 42312399
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaa 86  Q
    |||| |||||||| || | | ||| ||| |||||||||||| |||||||||| ||||||||||||||||||    
T  42312469 tttttaatattagaggatatattttatgcttcacaattttttatgagggtatatttgtaaaaatattcaaa 42312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 40413128 - 40413088
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaattttt 57  Q
    |||||||||||||||| | | ||||||||||||||||||||    
T  40413128 ttttaaatattagtggatatatttaatgtttcacaattttt 40413088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 51350 - 51452
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcatt 112  Q
    ||||||| ||| ||||| ||||| ||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||||| ||||| || |||    
T  51350 ctctttttaattttagttggtgtatttaatgtttcacaactttttatgagggtataattgtaaaaatattcaaaatgttacattaattaatgattgtatt 51449  T
Q  113 ggt 115  Q
    |||    
T  51450 ggt 51452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 12143766 - 12143682
Alignment:
Q  38 tttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgat 121  Q
    ||||||| |||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||| ||||||||| |||||    
T  12143766 tttaatgcttcacaattttttatgagggtgtatttgtaaaaatattcaaaaagttacattaattaatgattgcattggttttgat 12143682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 2950199 - 2950132
Alignment:
Q  39 ttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaa 106  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||| ||||||    
T  2950199 ttaatgtttcacaatttttatcaggatatatttgtaaaaatattcaaaaaattacattaattaatgaa 2950132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 34837220 - 34837129
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    |||||| ||||||| ||| ||| || |||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||| |||||    
T  34837220 tctttttaatattaatggatgtattgaatgcttcacaattttttatgagggtatatttgtaaaaatattcaaaaagttacactaattaatga 34837129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 180418 - 180526
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| ||||||||| | ||| ||||| | |||| ||||||| || ||||||| |||||||| ||||||||||||||||| |||| ||||| || ||||    
T  180418 tctttttaatattagtcgatgtatttaacgcttcaaaattttttataagggtatatttgtaaacatattcaaaaagttacactaattaatgagtgtattg 180517  T
Q  114 gtattgatg 122  Q
    || ||||||    
T  180518 gttttgatg 180526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 1856828 - 1856919
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||| ||||||| |||  || |||||||||| ||| ||| |||||| |||| |||||||||||||| ||||| |||||||||| |||||    
T  1856828 ctctttttaatattaatggaagtatttaatgttttacattttgtatgagagtatatttgtaaaaatatttaaaaaattacattaattaatga 1856919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 606685 - 606607
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    |||| ||||||||||| ||| |||||||||||||||  || ||| ||||||| ||||||||||| || |||||||||||    
T  606685 tttttaatattagtggatgtatttaatgtttcacaacattctataagggtatatttgtaaaaatgtttaaaaagttaca 606607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 7926883 - 7926991
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| |||||||  | |||| ||||||| ||||||||||| ||||||||||| |||||||   |||||||||||||| | |||| ||||  || ||||    
T  7926883 tctttttaatattaaagagtgtatttaatgcttcacaattttttatgagggtatatttgtaatcttattcaaaaagttatactaattaatgtgtgtattg 7926982  T
Q  114 gtattgatg 122  Q
    || ||||||    
T  7926983 gttttgatg 7926991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 6657956 - 6658018
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaa 76  Q
    |||||| ||||||||||||| | ||||||  ||||||| ||||||||||||||| ||||||||    
T  6657956 tctttttaatattagtgggtatatttaatacttcacaaatttttatgagggtatatttgtaaa 6658018  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 31116403 - 31116476
Alignment:
Q  19 ttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagtt 91  Q
    |||||| ||| ||| ||| || |||||||||||||| | ||| ||||||| |||||||| ||||||||||||||    
T  31116403 ttaaattttaatggatgtattgaatgtttcacaattctctataagggtatatttgtaaacatattcaaaaagtt 31116476  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 12453775 - 12453711
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaa 78  Q
    |||||||||||||| ||  |||||||||||||||| || ||||||| || |||| ||||||||||    
T  12453775 tcttttaaatattaatgaatgtgtttaatgtttcataactttttattagagtatatttgtaaaaa 12453711  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 11983652 - 11983567
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    ||||||| ||||||||||| ||| |||||||||||||||||||||  || |||| ||||||||| ||||||||||||||| |||||    
T  11983652 ctctttttaatattagtggatgtatttaatgtttcacaatttttacaagagtatatttgtaaaagtattcaaaaagttaccttaat 11983567  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 2225660 - 2225743
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||| ||||||||||| ||| ||||||||||||||| ||||||||| ||||| ||||||||||||||  |||||||||| ||||    
T  2225660 tttttaatattagtggttgtatttaatgtttcacaactttttatgaaggtatatttgtaaaaatatttcaaaagttacactaat 2225743  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 18705079 - 18705162
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttacattaat 99  Q
    |||| ||||||| | ||||| ||||||| ||||||| ||||||| ||| ||| |||||||||||||||||||||||||| ||||    
T  18705079 tttttaatattaataggtgtatttaatgcttcacaactttttataaggatatatttgtaaaaatattcaaaaagttacactaat 18705162  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 6688875 - 6688968
Alignment:
Q  23 atattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    ||||||||  |||| ||||||| || |||||||| ||||||||||| ||||||| | ||| |||||||||||| |||| ||||| |||||||||    
T  6688875 atattagtaagtgtatttaatgctttacaattttttatgagggtatatttgtaatagtatgcaaaaagttacactaattaatgattgcattggt 6688968  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 29948135 - 29948030
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaattttt-atgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggt 115  Q
    |||| ||||||| || |||| |||||||||| | ||||||| || || |||| |||||||||||||  |||||||||||||||  ||||| |||||||||    
T  29948135 tttttaatattaatgagtgtatttaatgttttataattttttattagagtatatttgtaaaaatatcaaaaaagttacattaaataatgattgcattggt 29948036  T
Q  116 attgat 121  Q
     |||||    
T  29948035 tttgat 29948030  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 14417936 - 14418008
Alignment:
Q  17 ttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaa 88  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||| ||||  ||||||| |||||| |||||    
T  14417936 ttttaaatattagtgggtgtatttaatgcttcacaattttttatgaaggtaaatttgtaagaatattaaaaaa 14418008  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 11691130 - 11691051
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaat-ttttatgagggtatttttgtaaaaatattcaaaaagtta 92  Q
    ||||||| ||| |||||| |||| |||||| ||||| ||| |||||||||| | | ||||||||||||||||||||||||    
T  11691130 ctctttttaatcttagtgagtgtatttaatatttcataatattttatgaggatgtatttgtaaaaatattcaaaaagtta 11691051  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 5289014 - 5289055
Alignment:
Q  81 ttcaaaaagttacattaatcaatgaatgcattggtattgatg 122  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  5289014 ttcaaaaagttacattaatcaattaatgcattggttttgatg 5289055  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 19296221 - 19296148
Alignment:
Q  22 aatattagtgggtgtgtttaatgtttcacaatttttatgagggtatttttgtaaaaatattcaaaaagttacat 95  Q
    |||||||| || |||||||||| ||| ||||||||||||||||||| | |||||||| |   ||||||||||||    
T  19296221 aatattagcggatgtgtttaatattttacaatttttatgagggtatatatgtaaaaaaaaataaaaagttacat 19296148  T

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Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 36477912 - 36477867
Alignment:
Q  68 ttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||||    
T  36477912 ttttttaaaaatattcaaaaagttacattaattaatgattgcattg 36477867  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 43442144 - 43442196
Alignment:
Q  53 tttttatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatga 105  Q
    ||||||||| ||||| || ||||||||||  ||||||||||||||| ||||||    
T  43442144 tttttatgatggtatattggtaaaaatatctaaaaagttacattaaacaatga 43442196  T

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Target: scaffold0024 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 154418 - 154526
Alignment:
Q  15 tcttttaaatattagtgggtgtgtttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattg 113  Q
    |||||| |||||| |||||||| ||||||| |||||| |||| |||||||| || ||||||||||||||||| |||||||| |||| ||||| || ||||    
T  154418 tctttttaatattggtgggtgtatttaatgcttcacagttttttatgagggcatgtttgtaaaaatattcaacaagttacactaattaatgagtgtattg 154517  T
Q  114 gtattgatg 122  Q
    || ||||||    
T  154518 gttttgatg 154526  T

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Target: scaffold1809 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1809
Description:

Target: scaffold1809; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 122
Target Start/End: Complemental strand, 544 - 459
Alignment:
Q  38 tttaatgtttcacaatttt-tatgagggtatttttgtaaaaatattcaaaaagttacattaatcaatgaatgcattggtattgatg 122  Q
    |||||||||||||||  || ||| ||||||| ||||||||||| || |||||||||||  ||| |||||  | |||||||||||||    
T  544 tttaatgtttcacaacattctataagggtatatttgtaaaaatctttaaaaagttacaacaattaatgatggtattggtattgatg 459  T

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Target: scaffold0836 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 3099 - 3180
Alignment:
Q  14 ctcttttaaatattagtgggtgtgtttaatgtttcacaa-tttttatgagggtatttttgtaaaaatattcaaaaagttaca 94  Q
    ||||||| ||||||||||| ||| |||||||||||||||  || ||| |||| || ||||||||||| || |||||| ||||    
T  3099 ctctttttaatattagtggatgtatttaatgtttcacaacattctataagggcatgtttgtaaaaatgtttaaaaaggtaca 3180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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