View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12187_low_1 (Length: 432)
Name: NF12187_low_1
Description: NF12187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12187_low_1 |
 | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 417
Target Start/End: Original strand, 14457831 - 14458229
Alignment:
| Q |
19 |
aacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttcccttgttactagcatagacctttctgataa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14457831 |
aacactactatgaagaaagcttggatgtgtctacgaaagaccaaatgttaacgtataccacgactctttcccttgttactagcatagacctttctgataa |
14457930 |
T |
|
| Q |
119 |
caacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataactggccaaattcacgaaacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14457931 |
caacttcactgggaatattcccaatgaaataacaaaactatccggtttagttgttctcaacttgtcaagaaaccatataactggccaaattcacgaaacc |
14458030 |
T |
|
| Q |
219 |
atgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458031 |
atgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccc |
14458130 |
T |
|
| Q |
319 |
tagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatcactttttctgggaatcctagtctctgtg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14458131 |
tagatttgtccaataataacctgtctggtgtcattccttatacaggccatatgacaacttttgaagctatcactttttctgggaatcctagtctctgtg |
14458229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 53 - 424
Target Start/End: Complemental strand, 14493485 - 14493114
Alignment:
| Q |
53 |
gaaagaccaaatgttaacgtataccacgactctttcccttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataaca |
152 |
Q |
| |
|
|||| |||||||| ||| ||||||| ||| |||||||||||||| ||||||||||||||| |||| ||||||| ||| |||||||| ||||| |||||| |
|
|
| T |
14493485 |
gaaaaaccaaatgctaaaatataccaagaccctttcccttgttacaagcatagacctttctaataataacttcagtggaaatattccaaatgagataaca |
14493386 |
T |
|
| Q |
153 |
aaactatccggtttagttgttctcaacttgtcaagaaaccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatc |
252 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
14493385 |
aaactatttggtttggtggttctcaacttgtcaagaaaccatataagtggtcaaattcctaaaaccatttcaaatctgcttcaattatcatcccttgatc |
14493286 |
T |
|
| Q |
253 |
tctcaaacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcat |
352 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||| | ||||||||| |||| ||||| || |||||||| |
|
|
| T |
14493285 |
tctcaaacaaccaactttccggaacaattccttcaagcttgtcttccttgtcatttttagggtccttggatttgtccgataacaacctctcgggtgtcat |
14493186 |
T |
|
| Q |
353 |
tccttatacaggccatatgacaacttttgaagctatcactttttctgggaatcctagtctctgtgctcctcc |
424 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||| |||||| |
|
|
| T |
14493185 |
tccatatacaggccatatgacaacttttgaagctatgactttttcgaggaattcgggtctctgtggtcctcc |
14493114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 71 - 424
Target Start/End: Complemental strand, 14469049 - 14468696
Alignment:
| Q |
71 |
gtataccacgactctttcccttgttactagcatagacctttctgataacaacttcactgggaatattcccaatgaaataacaaaactatccggtttagtt |
170 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
14469049 |
gtataccaagactctttcccttgttactggcatagacctttctcataacaacttcattggaaatattcccaatgaaataacaaaactatctggtttgatg |
14468950 |
T |
|
| Q |
171 |
gttctcaacttgtcaagaaaccatataactggccaaattcacgaaaccatgtcaaatctgcttcaattatcatctcttgatctctcaaacaaccaacttt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| || ||||||||||||||| | ||||| ||||| |
|
|
| T |
14468949 |
attctcaacttgtcaagaaaccatataactggcaaaattcctgaaaccatgtcaaatctgcatcaactagaatctcttgatctctcgagcaaccgacttt |
14468850 |
T |
|
| Q |
271 |
ctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacctgtctggtgtcattccttatacaggccatat |
370 |
Q |
| |
|
|||| ||||||| ||| ||| |||||||||||||||||||| |||| | |||||| | || ||||| |||||||||||||| |||||||| || |
|
|
| T |
14468849 |
ctggtaagattcctttaagtttgccttccttgtcatttttggggggcctaaacttgtcccacaacaaccttcagggtgtcattccttacacaggccaaat |
14468750 |
T |
|
| Q |
371 |
gacaacttttgaagctatca-ctttttctgggaatcctagtctctgtgctcctcc |
424 |
Q |
| |
|
|||||| ||||| || |||| ||||| |||||||||| ||||| |||| |||||| |
|
|
| T |
14468749 |
gacaacctttgatgc-atcagcttttactgggaatccgagtctttgtggtcctcc |
14468696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 258 - 339
Target Start/End: Original strand, 10164 - 10245
Alignment:
| Q |
258 |
aacaaccaactttctggaccaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacc |
339 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10164 |
aacaaccaactttctggaacaattccttcaagcttgtcttccttgtcatttttggggtccctagatttgtccaataataacc |
10245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University