View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12187_low_2 (Length: 431)
Name: NF12187_low_2
Description: NF12187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12187_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 5232125 - 5232523
Alignment:
| Q |
11 |
gagcacagaggtaaagaattttacattaaattttcatattttctatagtgaaatatttgccaatatatcgacactattaattgtgtgtgtatgtatgtgt |
110 |
Q |
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| T |
5232125 |
gagcacagaggtaaagatttttacattaa-ttttcatattttttatagtgaaatatttgccaatatatcgacactattaattgtgtgtgta----tgtgt |
5232219 |
T |
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| Q |
111 |
ctccaatatttcagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctgaagcaag |
210 |
Q |
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| T |
5232220 |
ctccaatatttcagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctcaagcaag |
5232319 |
T |
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| Q |
211 |
tgagatcaacaaaggtatttgtttcagaaaattgatagaagtttcttaattaatatggatagaagtttatctcgattcaatactaaattgaacgatgtat |
310 |
Q |
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| T |
5232320 |
tgagatcaacaaaggtatttgtttcagaaaatagatagaagtttcttaattaatatggatagaagtttatctcgattcaatactaaattgaacgatctat |
5232419 |
T |
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| Q |
311 |
gaaacatagatacagacatcagacacgacactgacacttcaacaccagtaataatttgnnnnnnnngaaatatttgatcgtactcacatgtgtcagtatc |
410 |
Q |
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| T |
5232420 |
gaaacatagatatagacatcagacacgacactgacacttcaaca-cagtaataatttgaaaaaaatgaaatatttgatcgtactcacatgtatcagtatc |
5232518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 228
Target Start/End: Original strand, 5655957 - 5656063
Alignment:
| Q |
122 |
cagaaatcttttaggtgaagatttgggtccactaagttctaaggatcttgagcagcttgaaaggcaattggattcatctctgaagcaagtgagatcaaca |
221 |
Q |
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| T |
5655957 |
cagaaaccttcttggtgaagacttaggtccattaggtaccaaagatcttgagcagcttgaacgccaacttgattcatctctcaagcaagtcaggtccacc |
5656056 |
T |
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| Q |
222 |
aaggtat |
228 |
Q |
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||||||| |
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| T |
5656057 |
aaggtat |
5656063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 12054309 - 12054349
Alignment:
| Q |
328 |
atcagacacgacactgacacttcaacaccagtaataatttg |
368 |
Q |
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| T |
12054309 |
atcaaacacgacactgacacgtcaacagcagtaataatttg |
12054349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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