View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12187_low_3 (Length: 397)
Name: NF12187_low_3
Description: NF12187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12187_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 32059398 - 32059713
Alignment:
| Q |
18 |
caaagaattttagatataccgctgtacccgcaagtgaatgaggatagattggtgtactggaatcatgaaa-gaatggatattattcggtaagaagtgcat |
116 |
Q |
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| T |
32059398 |
caaagaattttagatataccgctgtacccacaagtgaatgaggataaattggtgtactggaatcctgaaaagaatggatattattcggtaagaagtgcat |
32059497 |
T |
|
| Q |
117 |
atcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggg-gtgggatttggaggttgaaagttcccccaaaagttaaga |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
32059498 |
atcgtttgtgagtaaaagaaattgtggataactctcacttaagaaggcatgggtatttggagtgtaatttggaggttgaaagttcccccaaaagttaaga |
32059597 |
T |
|
| Q |
216 |
atatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtcgacgtgtattatgtgtaatgaccc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32059598 |
atatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtagaggggttaattgtccgtcgacgtgta-tatgtgtaatgaccc |
32059696 |
T |
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| Q |
316 |
ccatgaggacagttatc |
332 |
Q |
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||||||||||||||||| |
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| T |
32059697 |
ccatgaggacagttatc |
32059713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 381
Target Start/End: Original strand, 39532679 - 39533045
Alignment:
| Q |
13 |
catcacaaagaattttagatataccgctgtacccgcaagtgaatgaggatagattggtgtactggaatcatgaaa-gaatggatattattcggtaagaag |
111 |
Q |
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| T |
39532679 |
catcacaaatgatattaaatataccgctgttcccgcaagtaactgaggataaattagtgt---ggaatccggaaaagaatggacattattcggtaaaacg |
39532775 |
T |
|
| Q |
112 |
tgcatatcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggggtgggatttggaggttgaaagttcccccaaaagtt |
211 |
Q |
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| T |
39532776 |
tgcgtatcgcttgtgcgtggaggaaattgtggataactcgcatttacggaaaaatggattttgggttggaatctggaaattaaaagttcctccaaaagtc |
39532875 |
T |
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| Q |
212 |
aagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtcgacgtgtattatgtgtaatg |
311 |
Q |
| |
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|||| ||||||||||| || ||||| |||||||||||||||| || ||| |||| | ||||||||| ||||||||| ||||| | |||| |||| |
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| T |
39532876 |
aagagcatggtgtggcgtgtttgtagagaatgtttgcctactcgcgtcagactgaatcggagaggggttacttgtccgtctacgtgcgtgttgtgcaatg |
39532975 |
T |
|
| Q |
312 |
acccccatgaggacagttatcannnnnnnncccgctgctgtacagcagtaggtgtttggcgcacagcagg |
381 |
Q |
| |
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| || ||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||| |
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| T |
39532976 |
atccgcatgaggacagttatcacatttttttccactgctgtacagcagtaggtgtgtggcgtacagcagg |
39533045 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 41469685 - 41469768
Alignment:
| Q |
172 |
ttggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcg |
255 |
Q |
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||||||||| ||||||| || |||||||| || || |||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
41469685 |
ttggggtggaatttggaaattaaaagttccacctaaggttaagaatatgttgtggcgagtgtgtagagaatgtttacctactcg |
41469768 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 3237771 - 3237856
Alignment:
| Q |
206 |
aaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaagattgaactgtggaggggttaattgtccgtc |
291 |
Q |
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| T |
3237771 |
aaagttaagagtatggtttggagagtgtgtagggaatgtttacctacgcgtgtaagactaaaccgtagaggtgttatgtgtccgtc |
3237856 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 85 - 262
Target Start/End: Original strand, 33098221 - 33098398
Alignment:
| Q |
85 |
aaagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctca-cttaagaaggcatgggtattggggtgggat |
183 |
Q |
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|||||| ||| | ||||||||||||||||| || |||||||| | |||| || |||||||| ||||| |||| |||| |||| ||||| |||| || |
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| T |
33098221 |
aaagaacggacaatattcggtaagaagtgcgtactgtttgtgtattgaagacatagtggataattctcatcttaggaaga-atggtcattggagtggcat |
33098319 |
T |
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| Q |
184 |
ttggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcgtgtaaga |
262 |
Q |
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||||| |||||||| || || |||||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| |
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| T |
33098320 |
gtggagattgaaagtgcctccgaaagttaagagcatggtttggagagtgtgtagggaatgtttacctacacgtgcaaga |
33098398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 255
Target Start/End: Original strand, 29206514 - 29206683
Alignment:
| Q |
86 |
aagaatggatattattcggtaagaagtgcatatcgtttgtgtgtaaaagaaattgtggataactctcacttaagaaggcatgggtattggggtgggattt |
185 |
Q |
| |
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|||||||| ||||||||||| |||||| |||||| | ||||| ||||| |||||| |||| | ||| | |||||| ||| |||||| |||| |||| |
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| T |
29206514 |
aagaatgggcattattcggtaccaagtgcgtatcgtctttgtgtcaaagatattgtgaataatacacacctgagaaggagtggttattggagtggaattt |
29206613 |
T |
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| Q |
186 |
ggaggttgaaagttcccccaaaagttaagaatatggtgtggcgagtgtgtaggaaatgtttgcctactcg |
255 |
Q |
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||| ||||||||| || || || || |||||| |||||||| ||| ||||| ||||||| |||||||| |
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| T |
29206614 |
ggaagttgaaagtgcctcccaaggtcaagaattcggtgtggcaagtttgtagagaatgttttcctactcg |
29206683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 34072283 - 34072223
Alignment:
| Q |
166 |
tgggtattggggtgggatttggaggttgaaagttcccccaaaagttaagaatatggtgtgg |
226 |
Q |
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|||||||||| |||| || ||||| |||||||||||||| ||||| |||||| |||||||| |
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| T |
34072283 |
tgggtattggagtggcatctggagattgaaagttccccccaaagtcaagaatttggtgtgg |
34072223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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