View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12187_low_5 (Length: 316)
Name: NF12187_low_5
Description: NF12187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12187_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 174 - 297
Target Start/End: Complemental strand, 53940108 - 53939985
Alignment:
| Q |
174 |
ttatcataaagtggttgtataaatataattttttccctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttggatcgt |
273 |
Q |
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| T |
53940108 |
ttatcataaagtggttgtataaatataattttttctctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttggatcgt |
53940009 |
T |
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| Q |
274 |
tgtgaagtgaccctgaatggttgt |
297 |
Q |
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| T |
53940008 |
tgtgaagtgaccctgaatggttgt |
53939985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 53940281 - 53940184
Alignment:
| Q |
1 |
tgagaatttggctttagatactctcgtcaacttgtttaaagataattaacaaaagattagtgatattttaacaaccaattgagacaaccttgatgaca |
98 |
Q |
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| T |
53940281 |
tgagaatttggctttagatactctcgtcaacttgtttaaagataatttacaaaagattagtgatattttaacaactaattgagacaaccttgatgaca |
53940184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 39241184 - 39241224
Alignment:
| Q |
48 |
aacaaaagattagtgatattttaacaaccaattgagacaac |
88 |
Q |
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| T |
39241184 |
aacaaaagagtagtgatattttaacaaccatttgagacaac |
39241224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 32510871 - 32510904
Alignment:
| Q |
174 |
ttatcataaagtggttgtataaatataatttttt |
207 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
32510871 |
ttatcataaattggttgtataaatataatttttt |
32510904 |
T |
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