View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12187_low_9 (Length: 248)
Name: NF12187_low_9
Description: NF12187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12187_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 230
Target Start/End: Original strand, 5105167 - 5105383
Alignment:
| Q |
14 |
tgtgtgaaaatatgcatttgattgtgttcatcaattacatgatataagctccttttgtgtagtaacttaaagtgctcatatgcatcgttgagagattaat |
113 |
Q |
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| T |
5105167 |
tgtgtgaaaatatgtatttgattgtgttcatcaattacatgatataagctccttttgtgtagtaacttaaagtgctcatatgcatcgttgagagattaat |
5105266 |
T |
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| Q |
114 |
tcctataatcattggacataatcataggaacattgaagcttcatgggtcatcaagctttttgtgggacctgtatttcaataatatcacaacaattttttg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5105267 |
tcctataatcattggacataatcataggaacattgaagcttcatgggtcttcaagctttttgtgggacctgtatttcaataatatcacaacaattttttg |
5105366 |
T |
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| Q |
214 |
ttatagaggcaaattct |
230 |
Q |
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|||||||| |||||||| |
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| T |
5105367 |
ttatagagacaaattct |
5105383 |
T |
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