View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12188_high_8 (Length: 415)

Name: NF12188_high_8
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12188_high_8
NF12188_high_8
[»] scaffold0583 (2 HSPs)
scaffold0583 (289-400)||(7397-7508)
scaffold0583 (142-245)||(7552-7652)
[»] chr1 (2 HSPs)
chr1 (289-400)||(16651647-16651758)
chr1 (291-390)||(2347127-2347226)
[»] chr4 (1 HSPs)
chr4 (289-400)||(49715035-49715146)
[»] chr3 (4 HSPs)
chr3 (289-398)||(37798828-37798937)
chr3 (299-390)||(10014635-10014726)
chr3 (299-390)||(10115276-10115367)
chr3 (299-390)||(10252380-10252471)
[»] chr2 (6 HSPs)
chr2 (289-398)||(2878079-2878188)
chr2 (289-400)||(21416076-21416187)
chr2 (289-400)||(24257042-24257153)
chr2 (296-399)||(39437123-39437226)
chr2 (296-396)||(19815158-19815258)
chr2 (300-396)||(39439829-39439925)
[»] scaffold0029 (1 HSPs)
scaffold0029 (289-400)||(130994-131105)
[»] scaffold0002 (1 HSPs)
scaffold0002 (289-400)||(308811-308922)
[»] chr7 (2 HSPs)
chr7 (289-399)||(45116972-45117082)
chr7 (142-245)||(45117128-45117226)
[»] chr8 (4 HSPs)
chr8 (289-400)||(21107397-21107508)
chr8 (309-400)||(1422049-1422140)
chr8 (296-390)||(35136515-35136609)
chr8 (296-362)||(25063811-25063877)
[»] chr6 (4 HSPs)
chr6 (312-398)||(24200993-24201079)
chr6 (313-400)||(4214310-4214397)
chr6 (299-400)||(16013175-16013276)
chr6 (294-400)||(15652100-15652206)
[»] chr5 (2 HSPs)
chr5 (296-389)||(14188662-14188755)
chr5 (307-398)||(14185975-14186066)
[»] scaffold0122 (1 HSPs)
scaffold0122 (296-396)||(31476-31576)


Alignment Details
Target: scaffold0583 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 7508 - 7397
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  7508 tggaatcaaacaaccttattgttcattaaaaccatttccaatgagtaaggaagttaatcctttttcatatctctcacaaaccaaaggcgaacgactcgaa 7409  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  7408 ccctgatattcc 7397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 7652 - 7552
Alignment:
Q  142 ttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatatnnnnnnnnnnnttgaactccttcatatagttacacaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||    
T  7652 ttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatataaaaaaaaa---tgaactccttcatatagttacacaca 7556  T
Q  242 acat 245  Q
    ||||    
T  7555 acat 7552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 16651758 - 16651647
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  16651758 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 16651659  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  16651658 ccctgatattcc 16651647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 291 - 390
Target Start/End: Original strand, 2347127 - 2347226
Alignment:
Q  291 gaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaacc 390  Q
    |||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||    
T  2347127 gaatcaaacaaccttattgtccattaaaaccatttccaaagagtaaggaagttgatcctttttcacatccctcacaaaccaaaggtgaacgactcgaacc 2347226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 49715035 - 49715146
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  49715035 tggaatcaaacaaccttattgtccattaaaaccatttccaaggaataaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 49715134  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  49715135 ccctgatattcc 49715146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 37798937 - 37798828
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  37798937 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaagaaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 37798838  T
Q  389 ccctgatatt 398  Q
    ||||||||||    
T  37798837 ccctgatatt 37798828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 10014635 - 10014726
Alignment:
Q  299 caaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaacc 390  Q
    |||||||||||| ||||| ||||||||| ||  || |||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  10014635 caaccttattgtccattagaaccatttctaaggagaaaggaagttggtcatttttcatatctgtcacaaaccaaatgcgaacgactcgaacc 10014726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 10115276 - 10115367
Alignment:
Q  299 caaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaacc 390  Q
    |||||||||||| ||||| ||||||||| ||  || |||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  10115276 caaccttattgtccattagaaccatttctaaggagaaaggaagttggtcatttttcatatctgtcacaaaccaaatgcgaacgactcgaacc 10115367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 390
Target Start/End: Original strand, 10252380 - 10252471
Alignment:
Q  299 caaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaacc 390  Q
    |||||||||||| ||||| ||||||||| ||  || |||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  10252380 caaccttattgtccattagaaccatttctaaggagaaaggaagttggtcatttttcatatctgtcacaaaccaaatgcgaacgactcgaacc 10252471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 289 - 398
Target Start/End: Complemental strand, 2878188 - 2878079
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  2878188 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaagaaagttgatcctttttcatatccctcacaaaccaaaagcgaacgactcgaa 2878089  T
Q  389 ccctgatatt 398  Q
    ||||||||||    
T  2878088 ccctgatatt 2878079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 400
Target Start/End: Original strand, 21416076 - 21416187
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  21416076 tggaatcaaacaaccttattatccatcaaaaccatttccaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 21416175  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  21416176 ccctgatattcc 21416187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 24257153 - 24257042
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  24257153 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcaaa 24257054  T
Q  389 ccctgatattcc 400  Q
    |||| |||||||    
T  24257053 ccctaatattcc 24257042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 296 - 399
Target Start/End: Complemental strand, 39437226 - 39437123
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgat 395  Q
    ||||||||||  ||| ||||| ||||||||| || ||| |||||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  39437226 aaacaaccttgctgtccattagaaccatttctaagaagcaaggaagttggtcttttttcatatccctcacaaactaaatgcgaacgactcgaaccctgat 39437127  T
Q  396 attc 399  Q
    ||||    
T  39437126 attc 39437123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 19815258 - 19815158
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgat 395  Q
    ||||||||||||||| ||||| ||||||||  ||  || |||||||||| |||||||||||||| ||||||||| ||| || ||||| ||||||||||||    
T  19815258 aaacaaccttattgtccattagaaccatttttaaggagaaaggaagttggtcctttttcatatccctcacaaactaaaggcaaacgattcgaaccctgat 19815159  T
Q  396 a 396  Q
    |    
T  19815158 a 19815158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 39439925 - 39439829
Alignment:
Q  300 aaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgata 396  Q
    ||||||||||| ||||| ||||||||| ||  || |||||||||| |||||||| ||||| |||||||| |||| |||||||||| ||||| |||||    
T  39439925 aaccttattgtccattagaaccatttctaaggagaaaggaagttggtccttttttatatccctcacaaatcaaaggcgaacgacttgaaccatgata 39439829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 131105 - 130994
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  131105 tggaatcaaacaaccttattatccatgaaaaccatttccaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 131006  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  131005 ccctgatattcc 130994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 308922 - 308811
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||| | ||| ||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  308922 tggaatcaaacaaccttattatccatgaaaaccatttccaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaa 308823  T
Q  389 ccctgatattcc 400  Q
    ||||||||||||    
T  308822 ccctgatattcc 308811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 289 - 399
Target Start/End: Complemental strand, 45117082 - 45116972
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||  |||| ||||||||    
T  45117082 tggaatcaaacaactttattgttcattaaaaccatttccaatgagtaaggaagttgatcctttttcatatccctcacaaaccaaagacgaatgactcgaa 45116983  T
Q  389 ccctgatattc 399  Q
    | |||||||||    
T  45116982 ctctgatattc 45116972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 45117226 - 45117128
Alignment:
Q  142 ttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatatnnnnnnnnnnnttgaactccttcatatagttacacaca 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  45117226 ttccaaggagtcaaacaaaaattattgatataatcgcgccaaattatttctttcatatatat-----aaaaaattgaactccttcatatagttacacaca 45117132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 289 - 400
Target Start/End: Complemental strand, 21107508 - 21107397
Alignment:
Q  289 tggaatcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaa 388  Q
    |||||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||| ||||||||||||| ||||||||||| ||    
T  21107508 tggaatcaaacaaccttattgtccattaaaaccatttccaaggagtaatgaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcaaa 21107409  T
Q  389 ccctgatattcc 400  Q
    |||| |||||||    
T  21107408 ccctaatattcc 21107397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 400
Target Start/End: Original strand, 1422049 - 1422140
Alignment:
Q  309 gttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgatattcc 400  Q
    |||||||| || |||||||||  ||||||||||||  |||||| ||||||| ||||||||| |||  ||||| || ||||| ||||||||||    
T  1422049 gttcattagaatcatttccaaggagtaaggaagtttgtcctttgtcatatccctcacaaactaaagacgaacaacacgaactctgatattcc 1422140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 390
Target Start/End: Complemental strand, 35136609 - 35136515
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaacc 390  Q
    ||||||||||||||| ||||| |||||| | |||   |||||||||||  ||||| |||||||| || || |||||||  |||||||||||||||    
T  35136609 aaacaaccttattgtccattagaaccatcttcaaggggtaaggaagtttgtccttgttcatatccctaacgaaccaaagtcgaacgactcgaacc 35136515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 25063877 - 25063811
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctct 362  Q
    ||||||||||||||| ||||| |||||| | |||  ||||||||||||  ||||| |||||||||||    
T  25063877 aaacaaccttattgtccattagaaccatcttcaaggagtaaggaagtttgtccttgttcatatctct 25063811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 312 - 398
Target Start/End: Original strand, 24200993 - 24201079
Alignment:
Q  312 cattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgatatt 398  Q
    ||||||||||||||||||  ||||||||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||||||    
T  24200993 cattaaaaccatttccaaggagtaaggaagttgatcccttttcatatccctcacaaaccaaaggcggacgactcgaaccctgatatt 24201079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 4214397 - 4214310
Alignment:
Q  313 attaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgatattcc 400  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||    
T  4214397 attaaaaccattttcaaggagtaaggaagttgatcctttttcatatccctcacaaaccaaaggcgaacgactcgaatcctgctattcc 4214310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 299 - 400
Target Start/End: Complemental strand, 16013276 - 16013175
Alignment:
Q  299 caaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgatatt 398  Q
    |||||||||||| ||||| ||||||||| ||  || |||||||||  ||||||||||||||| |||| ||||||| | ||||||||||||||||||||||    
T  16013276 caaccttattgtccattagaaccatttctaaggagaaaggaagttagtcctttttcatatctgtcaccaaccaaaggtgaacgactcgaaccctgatatt 16013177  T
Q  399 cc 400  Q
    ||    
T  16013176 cc 16013175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 400
Target Start/End: Complemental strand, 15652206 - 15652100
Alignment:
Q  294 tcaaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctg 393  Q
    ||||||||||||||| |  |||| ||| ||||||||| ||| ||  ||||  ||||| ||||||||||||||||||||||  ||||    ||||||||||    
T  15652206 tcaaacaaccttattatctattataactatttccaatgagtgagagagtttgtccttgttcatatctctcacaaaccaaaaccgaatatttcgaaccctg 15652107  T
Q  394 atattcc 400  Q
    |||||||    
T  15652106 atattcc 15652100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 14188755 - 14188662
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaac 389  Q
    ||||||||||||||| ||||| ||||||||| ||  || |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  14188755 aaacaaccttattgtccattagaaccatttctaaggagaaaggaaattgatccttttttatatctctcacaaaccaaaggcgaacgactcgaac 14188662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 398
Target Start/End: Complemental strand, 14186066 - 14185975
Alignment:
Q  307 ttgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgatatt 398  Q
    |||| ||||| ||||||||| ||  || || || |||| || ||||||||||| |||| ||| |||| ||||||||||||||||||||||||    
T  14186066 ttgtccattagaaccatttctaaggagcaatgaggttggtcttttttcatatccctcaaaaatcaaaggcgaacgactcgaaccctgatatt 14185975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 31576 - 31476
Alignment:
Q  296 aaacaaccttattgttcattaaaaccatttccaataagtaaggaagttgatcctttttcatatctctcacaaaccaaatgcgaacgactcgaaccctgat 395  Q
    |||||| ||||||||  |||||||| ||||| || ||| |||||||||  |||||||| | ||| ||||||||||||| ||||||||||| |||||||||    
T  31576 aaacaatcttattgtcgattaaaactatttctaagaagaaaggaagttagtccttttttaaatccctcacaaaccaaaggcgaacgactcaaaccctgat 31477  T
Q  396 a 396  Q
    |    
T  31476 a 31476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University