View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12188_low_1 (Length: 727)
Name: NF12188_low_1
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 189 - 707
Target Start/End: Complemental strand, 28698309 - 28697789
Alignment:
| Q |
189 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaa- |
287 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| ||| | | |||||||||||||||||||||||||||||| |
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|
| T |
28698309 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctttaaagatttggacaagacaactatttccaaagtcagaattggaaa |
28698210 |
T |
|
| Q |
288 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
387 |
Q |
| |
|
|| || |||||| |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28698209 |
tgacgtacttattgaagtaaaaggcaagggaacagttgcaattgaaagcctttcaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
28698110 |
T |
|
| Q |
388 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
487 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||||||||||| |||||||||||||| |
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|
| T |
28698109 |
cataaccttttgagtgttactcaactgctagagaatggttataaggagttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatagaaatgg |
28698010 |
T |
|
| Q |
488 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgc |
587 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||| ||||||||||| |
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|
| T |
28698009 |
tcaatgttcaaatgaaaggcaagagcttttccttggatttgataaatgaggaacaacatgttgttgtacccaaggatggaaggattcaggttggtgttgc |
28697910 |
T |
|
| Q |
588 |
gttcctccaccatccatctatcgtgaacgttgtgggagtgatgagttccgtcgatacaatcaatggaaactctgcaaaatctgtcaaagaacctgttcca |
687 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28697909 |
gttcctccaccatccatctatcgtgaacgttgcgggagtgatgagttccgtcgatacaatcaatggaaactctgcaaaatctgtcaaagaacctgtttca |
28697810 |
T |
|
| Q |
688 |
-gggaaagcctggaaccaaaa |
707 |
Q |
| |
|
|||||| |||||||| |||| |
|
|
| T |
28697809 |
ggggaaatcctggaactaaaa |
28697789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 28698587 - 28698405
Alignment:
| Q |
1 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnn-taaccat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| ||||||| |
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|
| T |
28698587 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagcaatacaagtctcttttcaccttgtccattctgcaaaaaaaaataaccat |
28698488 |
T |
|
| Q |
100 |
ccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
182 |
Q |
| |
|
||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28698487 |
ccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
28698405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 189 - 690
Target Start/End: Original strand, 627280 - 627782
Alignment:
| Q |
189 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaa- |
287 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||| | | |||||||||||||||| |||||||||||||| |
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|
| T |
627280 |
gttggctcatagatagtggttgcacaaaccacatgacttatgatcgtgagctctataaagatttggacgagacaactatttccagagtcagaattggaaa |
627379 |
T |
|
| Q |
288 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
387 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
627380 |
tggcgtacttattgaagtaaaaggcaagggaacagttgcaattgaatgcctttcaggtttgaaactaatttctgatgtcttatatgtttctaaaattaat |
627479 |
T |
|
| Q |
388 |
caaaaccttttgagtgttactcaactgctagagaatgcttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatgg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
627480 |
caaaaccttttgagtgttactcaactgctagagaatggttataaggtgttgtttgaggataaaaaatgtgtgattacagatgcaaacaatatagaaatgg |
627579 |
T |
|
| Q |
488 |
tcaatgttcaaatgaaaggcaagagctttgccttggatttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgc |
587 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
627580 |
tcaatgttcaaatgaaatgcaagagcttttccttggatttgatgaatgaggaacaacatgttgctgtacataaggaaggaaggattcaggttggtgttgc |
627679 |
T |
|
| Q |
588 |
gttcctccaccatccatctatcgtgaacgttgtgggagtgatgagttccgtcgatacaatcaatggaaactctgcaaaatctgtcaaagaacctgttcca |
687 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
627680 |
attcttccaccatccatctatcgtgaacgctgcgggagtgatgagttccatggatacaatcaatggaaactctacaaaatctgtcaaagaacctgtttca |
627779 |
T |
|
| Q |
688 |
ggg |
690 |
Q |
| |
|
||| |
|
|
| T |
627780 |
ggg |
627782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 627000 - 627184
Alignment:
| Q |
1 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnn---taacc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
627000 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagcagcaatataagtctcttttcaccctatccatactgcaaaaaaaaaaataacc |
627099 |
T |
|
| Q |
98 |
atccaccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
182 |
Q |
| |
|
||||||||||||||| ||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
627100 |
atccaccaaacagatgttggtggagaccagacgtaaaatgtcacaagtgtggccagttaggacatgtggaaagaatatgcaaggc |
627184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 426 - 710
Target Start/End: Complemental strand, 33716568 - 33716283
Alignment:
| Q |
426 |
ttataaagtgttgtttgaggnnnnnnnntgtgtgattaaagatgcaagcaacatagaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
525 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33716568 |
ttataaagtgttgtttgaggataaaaaatgtgtgattaaagatgcaaacaacatacaaatggtcaatgttcaaatgaaaggcaagagctttgccttggat |
33716469 |
T |
|
| Q |
526 |
ttgatgaatgaggaaaaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgcgttcctccaccatccatctatcgtgaacgttgtgggag |
625 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
33716468 |
ttgatgaatgaggaacaacatgttgttgtacacaaggaaggaaggattcaagttggtgttgcgttcctccaccatccatctattgtgaacgttgcgggag |
33716369 |
T |
|
| Q |
626 |
tgatgagttccgtcgatacaatcaatggaaactctgcaaaatctgtcaaagaacctgttcca-gggaaagcctggaaccaaaatag |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
33716368 |
tgatgagttccgtcgatacaatcaatggaaactctgcaaaatctgtcaaagaacctgttccaggggaaagcctggaatcaaaatag |
33716283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 189 - 429
Target Start/End: Complemental strand, 33721097 - 33720856
Alignment:
| Q |
189 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccgaaggagacaactatttccaaagtcagaattggaa- |
287 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
33721097 |
gttggcttatagatattggttgcacaaaccacatgacttatgatcatgagctctttaatgatccggacgagacaactatttccaaagtcagaattggaaa |
33720998 |
T |
|
| Q |
288 |
tggcgcacttatcgaagtaaaaggcaaggtaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
387 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33720997 |
tggcgcacttatcgaagtaaaaggcaagggaacggttgcaattgaaagccttttaggtttgaaactaatttctgatgtcttatatgttcctaaaattaat |
33720898 |
T |
|
| Q |
388 |
caaaaccttttgagtgttactcaactgctagagaatgcttat |
429 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
33720897 |
caaaaccttttgagtgttactcaaccgctagagaatggttat |
33720856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 33721374 - 33721193
Alignment:
| Q |
1 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcnnnnnnnntaaccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33721374 |
aaattaaagaactacaatggtggaaggaatgagaaaagaaaccagagaagcaatacaagtctcttttcaccctgtccatactgcaaaaaaaataaccatc |
33721275 |
T |
|
| Q |
101 |
caccaaacagatattggtggagaccaaaagtaaaatgtcacaagtgtggtcagttaggacatgtggaaagaatatgcaaggc |
182 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
33721274 |
cacaaaacagatattggtggagaccaaacgtaaaatgtcagaagtgttgtcagttaggacatgtggaaagaatatgcaaggc |
33721193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 640 - 707
Target Start/End: Original strand, 50793736 - 50793804
Alignment:
| Q |
640 |
gatacaatcaatggaaactctgcaaaatctgtcaaagaacctgttccaggga-aagcctggaaccaaaa |
707 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
50793736 |
gatacaatcaatggaaattctgcaaaatctgtcaaagaacctgttccagggacaagcctggaaccaaaa |
50793804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 652 - 707
Target Start/End: Original strand, 27711514 - 27711570
Alignment:
| Q |
652 |
ggaaactctgcaaaatctgtcaaagaacctgttcca-gggaaagcctggaaccaaaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| |
|
|
| T |
27711514 |
ggaaactctgcaaaatctgtcaaagaacatgttccaggggaaatcctggaaccaaaa |
27711570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 31082293 - 31082343
Alignment:
| Q |
342 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
392 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
31082293 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
31082343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 9307516 - 9307566
Alignment:
| Q |
342 |
aggtttgaaactaatttctgatgtcttatatgttcctaaaattaatcaaaa |
392 |
Q |
| |
|
|||| ||||||| || |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
9307516 |
aggtctgaaacttatctctgatgttttatatgttcctgaaattaatcaaaa |
9307566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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