View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12188_low_10 (Length: 411)
Name: NF12188_low_10
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 391
Target Start/End: Original strand, 36021957 - 36022337
Alignment:
| Q |
11 |
cagagacttgaacaatgggttgtaattcaacactttcagattccaagctatatacagggaggaccccacaaccctttatcccatcagttgaccattcttc |
110 |
Q |
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| T |
36021957 |
cagagacttgaacaatgggttgtaattcaacactttcagattccaagctatatacagggaggaccccacaaccctttatcccatcggttgaccattcttc |
36022056 |
T |
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| Q |
111 |
tgcctcgttagcacgacacatgaattcacatgaaatactgcaatgatcaccttcactttcattcatagtccagtccagcctttcaaaacaccatatttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36022057 |
tgcctcgttagcacgacacatgaattcacatgaaatactgcaatgatcaccttcactttcattcatagtccagtccagcctttcaaaacaccatatttct |
36022156 |
T |
|
| Q |
211 |
gtgaaggagcttaataatacatggtcttcagttaacatctcagcactaaccacttgatcccaattgaagattatttttccgttttgaaaacaatcacagc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36022157 |
gtgaaggagcttaataatacatggtcttcagttaacatctcagcactaaccacttgatcccaattgaagattatttttccgttttgaaaacaatcacagc |
36022256 |
T |
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| Q |
311 |
aaacagattcgtaataatcaccatatctcccagaaagaatgatgcaaaaaatcaaagcggacaacttacatttgggatcaa |
391 |
Q |
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| T |
36022257 |
aaacagattcgtaataatcaccatatctcccagaaagaatgatgcaaaaaatcaaagcggacaacttacatttgggatcaa |
36022337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 36000946 - 36000978
Alignment:
| Q |
60 |
atatacagggaggaccccacaaccctttatccc |
92 |
Q |
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| T |
36000946 |
atatacagggaagaccccacaaccctttatccc |
36000978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Complemental strand, 16339103 - 16339052
Alignment:
| Q |
51 |
ttccaagctatatacagggaggaccccacaaccctttatcccatcagttgac |
102 |
Q |
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|||||||||| ||||| ||| ||||||||||||||||||||| | ||||||| |
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| T |
16339103 |
ttccaagctagatacaaggatgaccccacaaccctttatccccttagttgac |
16339052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 12898573 - 12898520
Alignment:
| Q |
51 |
ttccaagctatatacagggaggaccccacaaccctttatcccatcagttgacca |
104 |
Q |
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| T |
12898573 |
ttccaagccataaacagggaagatcccacaaccctttatccccttagttgacca |
12898520 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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