View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12188_low_17 (Length: 250)
Name: NF12188_low_17
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3729592 - 3729352
Alignment:
| Q |
1 |
aaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3729592 |
aaaacaaattgctaatagtaaattaaaattttgattttcagctccataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaa |
3729493 |
T |
|
| Q |
101 |
atatattcaacttgttttgtcatgtctacctatattagttccaatatatacatatagaaagnnnnnnnnctatttactatttagatttagaaatcatgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
3729492 |
atatattcaacttgttttgtcatgtctacctatataagttccaatatatacatatagaaa-----aaaactatttactatttaga-ttagaaatcatgat |
3729399 |
T |
|
| Q |
201 |
ttcctcaactagtaaattatgcactgtcttcatgttcatctctctcg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3729398 |
ttcctcaactagtaaattatgcactgtcttcatgttcatctgtctcg |
3729352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 3740728 - 3740574
Alignment:
| Q |
1 |
aaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaa |
100 |
Q |
| |
|
||||||||||| ||||| ||||| |||| |||||||||||||||||| ||| | ||||| ||||||| | ||||||||||| | |||| ||||| || |
|
|
| T |
3740728 |
aaaacaaattgataata-taaataaaaaaattgattttcagctcaatacacttt-tcaca-gttggctcttagagagactatatcgacatatcattttaa |
3740632 |
T |
|
| Q |
101 |
atatattcaacttgttttgtcatgtctacctatattagttccaatatatacatataga |
158 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3740631 |
aaatattcaacttgttttgtcatgtctacctatattagttctaatatatacatataga |
3740574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 3737350 - 3737198
Alignment:
| Q |
6 |
aaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatgggcataccatttcaaatata |
105 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| || |||||| | |||||||| |||||| || |||||||||||||||| ||||||||| || |
|
|
| T |
3737350 |
aaattgataataataaattaaaattttgatttttagaccaataagcgttgtcacatcttggctcctagagagactatatgggcaggtcatttcaaaaatg |
3737251 |
T |
|
| Q |
106 |
ttcaacttgttttgtcatgtctacctatattagttccaatatatacatataga |
158 |
Q |
| |
|
|| |||| |||||||||| ||||| |||| | ||| ||||||||||||||||| |
|
|
| T |
3737250 |
ttaaactagttttgtcatatctacttatactggtttcaatatatacatataga |
3737198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 3740534 - 3740473
Alignment:
| Q |
178 |
tatttagatttagaaatcatgatttcctcaactagtaaattatgcactgtcttcatgttcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||| |
|
|
| T |
3740534 |
tatttagatttagaaatcatgatttcctcgactagtaaattctacactgtcttcatgttcat |
3740473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 3755321 - 3755236
Alignment:
| Q |
1 |
aaaacaaattgctaatagtaaattaaaattttgattttcagctcaataaactctgtcacatgttggcttctgaagagactatatgg |
86 |
Q |
| |
|
||||||||||| ||||| |||||| |||||| ||||||| || ||||||||| ||||| | |||||| || || ||||||||||| |
|
|
| T |
3755321 |
aaaacaaattgataataataaattgaaatttagattttcggcccaataaactttgtcatgtcttggctcctaaatagactatatgg |
3755236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University