View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12188_low_18 (Length: 250)
Name: NF12188_low_18
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 17404664 - 17404436
Alignment:
| Q |
18 |
gaacccaattccataatcacattgttaacaaacaaccctgatattataatcatattgctaacccaagatttgaatgctatgatatgatcacaatttacta |
117 |
Q |
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| T |
17404664 |
gaacccaattccataatcacattgttaacaaacaaccctgatattataatcatattgctaacccaagatttgaatgctatgatatgatcacaatttacta |
17404565 |
T |
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| Q |
118 |
attggctaatgcatactcaatttacatggaagaatttagcatatttgttgattccttacttcatagttcaagannnnnnnnnnnnnagttgggttcaacg |
217 |
Q |
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| T |
17404564 |
attggctaatgcatactcaatttacatggaagaatttagcatatttgttgattccttacttcatagttcaagatttttttttttttagttgggttcaacg |
17404465 |
T |
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| Q |
218 |
ttttcttgtacacaacactactgttcttt |
246 |
Q |
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| T |
17404464 |
ttttcttgtacacaacactactgttcttt |
17404436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 17398272 - 17398103
Alignment:
| Q |
18 |
gaacccaattccataatcacattgttaacaaacaaccctgatattataatcatattgctaacccaagatttgaatgctatgatatgatcacaatttacta |
117 |
Q |
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||||| |||||| ||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| |||| | |
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| T |
17398272 |
gaaccgaattccgtaatcacgttgttaacacacaaccctgatatcgtaatcatatggctaacccaagatttcaatgctatgatatgatcacggtttatca |
17398173 |
T |
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| Q |
118 |
attggctaatgcatactcaatttacatggaagaatttagcatatttgttgattccttacttcatagttcaaga |
190 |
Q |
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| T |
17398172 |
attgactaccacatactcaagatatgtgtaagactttaac---tttgttaattccttacttcatagttcaaga |
17398103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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