View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12188_low_2 (Length: 651)

Name: NF12188_low_2
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12188_low_2
NF12188_low_2
[»] chr2 (1 HSPs)
chr2 (9-632)||(2911587-2912212)


Alignment Details
Target: chr2 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 9 - 632
Target Start/End: Original strand, 2911587 - 2912212
Alignment:
Q  9 agaagcagagaccaaagtgactatttgctcatc--gttaccaaaattttttatatccataatctgccacgtcacaaatattataaaaacaataagctgta 106  Q
    |||| ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2911587 agaaccagagaccaaagtgactatttgctcatcatgttaccaaatttttttatatccataatctgccacgtcacaaatattataaaaacaataagctgta 2911686  T
Q  107 tacgtactcaatggataatagagtacaaagtggtatacatatacatctacgtgggtgatcatatatcaattaaatccagtagcctccaaatatagtcagt 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||      
T  2911687 tacgtactcaatggataatagagtacaaagtggtatgcatatacatctacgtgggtcatcatatatcaattaaatccagtagcctccaaatatagtca-- 2911784  T
Q  207 catatacaaactctttgatttaattccaatcccaaccaaaaccaaagctaa----atacatcattatacacgtaaactttgcaaatggccaacgtggcat 302  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  2911785 --tatacaaactctttgatttaattccaatcccaaccaaaaccaaagctaattaaatacatcattatacacgtaaactttgcaaatggccaacgtggcat 2911882  T
Q  303 tgttacttatttcagtccatgatgttgtaactgacacgtgtcctatctcagcccacagagttgagttatgcccattgttattttcttgtttggaaactcc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2911883 tgttacttatttcagtccatgatgttgtaactgacacgtgtcctatctcagcccacagagttgagttatgcccattgttattttcttctttggaaactcc 2911982  T
Q  403 gccaaataagaccacatccttagccggttgtttccacctctttcaacaggtagcaccatgttttataagtaacataaagccattatttcattttgtgtta 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2911983 gccaaataagaccacatccttagccggttgtttccacctctttcaacaggtagcaccatgttttataagtaagataaagccattatttcattttgtgtta 2912082  T
Q  503 ctattagtatacactacactgcacaatcttcattcatttcaatcccacttcttagtattttatctctcaagcacctattattctgcnnnnnnntcatcta 602  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  2912083 ctattagtatacactacactgcacaatcttcattcatttcaatcccacttcttagtattttatctctcaagcacctattattctgcaaaaaaatcatcta 2912182  T
Q  603 agcaaaaagattcttcttcacttttcattt 632  Q
    ||||||||||||||||||||||||||||||    
T  2912183 agcaaaaagattcttcttcacttttcattt 2912212  T

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