View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12188_low_21 (Length: 235)
Name: NF12188_low_21
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_21 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 17404199 - 17404421
Alignment:
| Q |
13 |
tgtgctgctccattaaagtgaggaagaaccaaccaacaactgagtatcaactttgcataaggccaaatcggaagcctgaaaattgcaactatcaacttca |
112 |
Q |
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| T |
17404199 |
tgtgctgctccattaaagtgaggaagaaccaaccaacaactcagtatcaactttgcataaggccaaatcggaagcctgaaaattgcaactatcaacttca |
17404298 |
T |
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| Q |
113 |
cataaaagttttgcaagcaagaaactagcaacttaattgtgcaccacggaaactaaactatactctgctaataatttttcatgctcacaaaataaagcat |
212 |
Q |
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| T |
17404299 |
cataaaagttttgtaagcaagaaactagcaacttaattgtgcaccacggaaactaaactatactctgctaataatttttcatgctcacaaaataaagcat |
17404398 |
T |
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| Q |
213 |
gcaaatcatgctaaagcagtatc |
235 |
Q |
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| T |
17404399 |
gcaaatcatgctaaggcagtatc |
17404421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 17397879 - 17398092
Alignment:
| Q |
13 |
tgtgctgctccattaaagtgaggaagaaccaaccaacaactgagtatcaactttgcataaggccaaatcggaagcctgaaaattgcaactatcaacttca |
112 |
Q |
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||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||| ||| |||||||||||||| ||||||||||| |
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| T |
17397879 |
tgtgctgctacattaaagtgagaaagaaccaaccaaaaactgagtatcaactttgcatatggccaaattggacgcctgaaaattgcatctatcaacttcg |
17397978 |
T |
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| Q |
113 |
cataaaagttttgcaagcaagaaactagcaacttaattgtgcaccacggaaactaaactatactctgctaataatttttcatgctcacaaaataaagcat |
212 |
Q |
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| T |
17397979 |
cataaaagtttcggaagctagaaattagcaacttaattgtgcactagaagaactaatttatactatcctaataatttctcttgcccactaaaaaaagcac |
17398078 |
T |
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| Q |
213 |
gcaaatcatgctaa |
226 |
Q |
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| T |
17398079 |
gcaaatcatgctaa |
17398092 |
T |
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