View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12188_low_23 (Length: 218)

Name: NF12188_low_23
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12188_low_23
NF12188_low_23
[»] chr4 (1 HSPs)
chr4 (10-200)||(30776132-30776322)
[»] chr2 (7 HSPs)
chr2 (10-196)||(16660967-16661153)
chr2 (35-98)||(12000373-12000436)
chr2 (37-159)||(43626362-43626484)
chr2 (23-171)||(12244329-12244477)
chr2 (38-156)||(7543320-7543438)
chr2 (110-172)||(16656525-16656587)
chr2 (22-60)||(16656637-16656675)
[»] chr7 (11 HSPs)
chr7 (20-159)||(3148396-3148535)
chr7 (20-164)||(8584469-8584613)
chr7 (20-168)||(8630253-8630401)
chr7 (22-171)||(8647728-8647877)
chr7 (22-186)||(7876745-7876909)
chr7 (22-171)||(1302338-1302487)
chr7 (22-156)||(8660271-8660405)
chr7 (22-159)||(6790437-6790574)
chr7 (22-156)||(8655376-8655510)
chr7 (22-159)||(10492939-10493076)
chr7 (39-171)||(13332076-13332208)
[»] chr5 (2 HSPs)
chr5 (41-177)||(42554107-42554243)
chr5 (22-159)||(28220974-28221111)
[»] chr1 (3 HSPs)
chr1 (22-172)||(4677465-4677615)
chr1 (22-156)||(15596086-15596220)
chr1 (125-199)||(34465148-34465220)
[»] chr8 (1 HSPs)
chr8 (34-159)||(43745863-43745985)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 200
Target Start/End: Original strand, 30776132 - 30776322
Alignment:
Q  10 agcagcacagaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcc 109  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30776132 agcagcaccgaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcc 30776231  T
Q  110 tccagccaaacagccacacacgagtacgttgttccaaggtctattcccacggcatgtccttcacatttgttcgccatgcgatctttcaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30776232 tccagccaaacagccacacacgagtacgttgttccaaggtctatccccacggcatgtccttcacatttgttcgccatgcgatctttcaaag 30776322  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 16661153 - 16660967
Alignment:
Q  10 agcagcacagaccaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcc 109  Q
    |||| ||| ||||||||||||| ||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||     
T  16661153 agcaccaccgaccaacctttgagcatcagtaaaagcaacaaaagaaggtgtaattttgttgccttcatcgttgtggataatctcaactctgtttttctct 16661054  T
Q  110 tccagccaaacagccacacacgagtacgttgttccaaggtctattcccacggcatgtccttcacatttgttcgccatgcgatctttc 196  Q
    |||| ||||||||| ||||| ||||| |||||||| |||||||| |||||  |||| |||||   |||  |||||||| ||||||||    
T  16661053 tccaaccaaacagcaacacatgagtatgttgttcctaggtctatgcccacaacatgcccttcgtgttttctcgccatgtgatctttc 16660967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 12000373 - 12000436
Alignment:
Q  35 tcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactc 98  Q
    ||||||||||||||| |||||||||| |||||| |||||| ||||||||| || ||||||||||    
T  12000373 tcagtgaaagcaacacaagaaggtgttattttgttgccttgatcgttgtgaatgatttcaactc 12000436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 43626362 - 43626484
Alignment:
Q  37 agtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtac 136  Q
    |||||||| |||||||||||||||  || || | ||||  || ||||||||||| || |||||  | || || || ||||| ||||| | ||| || |||    
T  43626362 agtgaaagaaacaaaagaaggtgtagttctgtttccttggtcattgtggataatctctactcttctgttttcatcaagccacacagcaatacaagaatac 43626461  T
Q  137 gttgttccaaggtctattcccac 159  Q
    |||||||||||||||||||||||    
T  43626462 gttgttccaaggtctattcccac 43626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 171
Target Start/End: Complemental strand, 12244477 - 12244329
Alignment:
Q  23 aacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacag 122  Q
    ||||||||| | ||||||||||||||| ||||||||||  || || |||| | ||||||||| || |||||||| |     |  |  ||| |||| || |    
T  12244477 aacctttgatcttcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacgagagtgttgttcctgccatactg 12244378  T
Q  123 ccacacacgagtacgttgttccaaggtctattcccacggcatgtccttc 171  Q
    | ||||| || |||||||| ||||||||||||||||||||| |||||||    
T  12244377 caacacatgaatacgttgtaccaaggtctattcccacggcacgtccttc 12244329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 7543320 - 7543438
Alignment:
Q  38 gtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacg 137  Q
    |||||||||||||||||||||||  || || ||||||  |||||||| || ||||||||||  |  |  |  ||| |||| || || ||||| |||||||    
T  7543320 gtgaaagcaacaaaagaaggtgttgttctgttgccttggtcgttgtgaatgatttcaactcgatagtgttgatcctgccatactgcaacacaagagtacg 7543419  T
Q  138 ttgttccaaggtctattcc 156  Q
    |||| ||||||||||||||    
T  7543420 ttgtgccaaggtctattcc 7543438  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 16656587 - 16656525
Alignment:
Q  110 tccagccaaacagccacacacgagtacgttgttccaaggtctattcccacggcatgtccttca 172  Q
    |||| ||| ||||| ||||| || || ||||||||||||||||||||||| ||| ||||||||    
T  16656587 tccatccacacagcaacacatgaataagttgttccaaggtctattcccactgcacgtccttca 16656525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 16656675 - 16656637
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgt 60  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  16656675 caacctttgatcatgagtgaaagcaacaaaagaaggtgt 16656637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 159
Target Start/End: Original strand, 3148396 - 3148535
Alignment:
Q  20 accaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaa 119  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||  || ||||| ||||| ||||||||||| | ||| || |||||||    
T  3148396 accaacctttgatcatcagtgaaagcaacaaaagaaggtgtggttttgttgccttggtcattgtgaataatctcaactctgttgtgctcatcgagccaaa 3148495  T
Q  120 cagccacacacgagtacgttgttccaaggtctattcccac 159  Q
    |||| || ||||| ||||||||||||||||| ||||||||    
T  3148496 cagcaacgcacgaatacgttgttccaaggtcgattcccac 3148535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 8584613 - 8584469
Alignment:
Q  20 accaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaa 119  Q
    |||||||||||| |||| || ||||||||||| ||||||||||||||  |||||||||||||||| ||||| ||||||||||| || || |||| |||||    
T  8584613 accaacctttgatcatcggtaaaagcaacaaaggaaggtgtgattttattgccttcatcgttgtgaataatctcaactctgttcttttcttccaaccaaa 8584514  T
Q  120 cagccacacacgagtacgttgttccaaggtctattcccacggcat 164  Q
    || | ||||| || || ||||||||||||||||||||||| ||||    
T  8584513 caccaacacaagaataggttgttccaaggtctattcccacagcat 8584469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 168
Target Start/End: Original strand, 8630253 - 8630401
Alignment:
Q  20 accaacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaa 119  Q
    |||||||||||| |||| || |||||||| || ||||||||||||||  |||||||||| ||||| ||||| ||||||||||| || || |||| |||||    
T  8630253 accaacctttgatcatcggtaaaagcaacgaaggaaggtgtgattttattgccttcatcattgtgaataatctcaactctgttcttttcttccaaccaaa 8630352  T
Q  120 cagccacacacgagtacgttgttccaaggtctattcccacggcatgtcc 168  Q
    || | ||||| || || ||||||||||||||||||||||| ||||||||    
T  8630353 caccaacacaagaataggttgttccaaggtctattcccacagcatgtcc 8630401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 8647728 - 8647877
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| |||| |||||||||||||||||||||||  || || | |||| ||| ||||| ||||| |||||||| || |  || || ||||| |||    
T  8647728 caacctttgatcatcggtgaaagcaacaaaagaaggtgtagttctgtttccttgatcattgtgaataatctcaactctattgtgttcatcaagccacaca 8647827  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccacggcatgtccttc 171  Q
    || |||||||| |||||||||||||||||||||||||| ||| |||||||    
T  8647828 gcaacacacgaatacgttgttccaaggtctattcccactgcaagtccttc 8647877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 7876909 - 7876745
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| |||  |||||||||||||||||||||||  || || ||||||  || ||||| |||||||| ||||| || |  || || ||||| |||    
T  7876909 caacctttgatcattcgtgaaagcaacaaaagaaggtgttgttctgttgccttgttcattgtgaataatttcgactctattgtgttcatcaagccacaca 7876810  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccacggcatgtccttcacatttgttcgccat 186  Q
    || ||||| || |||||||||||||||||||||||||| ||| |||||||  |||| ||||||||    
T  7876809 gcaacacaggaatacgttgttccaaggtctattcccaccgcacgtccttcgtattttttcgccat 7876745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 1302338 - 1302487
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| |||| ||||||||||||||||| |||||  ||||| ||||||  ||||||| ||| || || ||||| || |  | ||||||||| |||    
T  1302338 caacctttgatcatcggtgaaagcaacaaaagacggtgttgttttgttgccttggtcgttgtagatgatctctactctattgtgattctccagccacaca 1302437  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccacggcatgtccttc 171  Q
    || |||||||| || || ||||||||||||||||| || ||| |||||||    
T  1302438 gcaacacacgaataagtagttccaaggtctattccaacagcacgtccttc 1302487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 8660271 - 8660405
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| | ||||||||||||||||| ||||||||  ||||| | ||||  ||||||| ||| || || ||||  || |  | ||||||||| |||    
T  8660271 caacctttgatcgtcagtgaaagcaacaaatgaaggtgttgttttgtttccttggtcgttgtagatgatctcgactcgattgtgattctccagccacaca 8660370  T
Q  122 gccacacacgagtacgttgttccaaggtctattcc 156  Q
    || |||||||| || ||||||||||||||||||||    
T  8660371 gcaacacacgaataggttgttccaaggtctattcc 8660405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 6790437 - 6790574
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||  |||| |||||||||||||||||||||||| ||||| | ||||  || ||||| ||||| |||||||| || |  || || ||||| |||    
T  6790437 caacctttggtcatcggtgaaagcaacaaaagaaggtgtggttttgttaccttggtcattgtgaataatctcaactctattgtgttcatcaagccacaca 6790536  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccac 159  Q
     | ||||| || || |||||||| ||||||||||||||    
T  6790537 ccaacacaagaatatgttgttcccaggtctattcccac 6790574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 8655376 - 8655510
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    ||||||||||  ||||||||||||||||| |||||||||  || |  |||||| ||| ||||| ||||| |||||||| || |  || || ||||| |||    
T  8655376 caacctttgataatcagtgaaagcaacaacagaaggtgtagttctattgccttgatcattgtgaataatctcaactctattgtgatcgtcaagccacaca 8655475  T
Q  122 gccacacacgagtacgttgttccaaggtctattcc 156  Q
    || ||||| || || |||||||| |||||||||||    
T  8655476 gcaacacatgaataggttgttccgaggtctattcc 8655510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 10493076 - 10492939
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| |||   ||||||||||||||||||||||  || |  | |||| ||| ||||| |||||||||||||| |  |  || || ||||| |||    
T  10493076 caacctttgatcattgttgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatttcaactctttggtgttcatcaagccataca 10492977  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccac 159  Q
    || ||||| ||||| ||||||||||| |||||||||||    
T  10492976 gcaacacatgagtaggttgttccaagatctattcccac 10492939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 13332208 - 13332076
Alignment:
Q  39 tgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgt 138  Q
    ||||||||||||||||||||||  || |  | |||| ||| ||||| ||||| |||||||| |  |  || || ||||| ||||| ||||| ||||| ||    
T  13332208 tgaaagcaacaaaagaaggtgtagttctatttccttgatcattgtgaataatctcaactctttggtgttcatcaagccacacagcaacacatgagtaggt 13332109  T
Q  139 tgttccaaggtctattcccacggcatgtccttc 171  Q
    |||||||||||| |||||||| ||| |||||||    
T  13332108 tgttccaaggtcgattcccactgcacgtccttc 13332076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 177
Target Start/End: Complemental strand, 42554243 - 42554107
Alignment:
Q  41 aaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgagtacgttg 140  Q
    ||||||||||||||||||||  ||||| |||||| ||| ||||| ||||| |||||||| ||||  || ||   ||| ||||  |||||||| |||||||    
T  42554243 aaagcaacaaaagaaggtgttgttttgttgccttgatcattgtgaataatctcaactctattttgttcatcttcccacacagtaacacacgaatacgttg 42554144  T
Q  141 ttccaaggtctattcccacggcatgtccttcacattt 177  Q
    ||||||||||||||||||| ||| |||||||| ||||    
T  42554143 ttccaaggtctattcccactgcacgtccttcatattt 42554107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 159
Target Start/End: Original strand, 28220974 - 28221111
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||| | |||| |||||||||||||||||||| ||  ||||| |||||| ||| ||||| ||||| ||||| || || |  || ||  |||| |||    
T  28220974 caacctttcatcatcggtgaaagcaacaaaagaaggagttgttttgttgccttgatcattgtgaataatctcaaccctattgtgttcatcttgccacaca 28221073  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccac 159  Q
    || ||||| || |||||||||||||| |||||||||||    
T  28221074 gcaacacatgaatacgttgttccaagatctattcccac 28221111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 4677615 - 4677465
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| ||||||| ||||||||||||||||||||  ||||| ||||||  || ||||  ||||| || |||||||| |  | ||||||||| |||    
T  4677615 caacctttgatcatcagtaaaagcaacaaaagaaggtgttgttttgttgccttgttcattgtaaataatctccactctgttgtgattctccagccacaca 4677516  T
Q  122 gccacacacgagtacgttgttccaaggtctattcccacggcatgtccttca 172  Q
    || ||||| || || || |||||||| ||||||||||| ||| ||||||||    
T  4677515 gcaacacatgaataagtagttccaagatctattcccacagcacgtccttca 4677465  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 22 - 156
Target Start/End: Original strand, 15596086 - 15596220
Alignment:
Q  22 caacctttgaccatcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaaca 121  Q
    |||||||||| ||| |||||||| ||||||||||||||| ||| || | ||||  || ||||||||||| || ||||| || |  || || ||||| |||    
T  15596086 caacctttgatcattagtgaaagaaacaaaagaaggtgtaattctgtttccttggtcattgtggataatctcgactctattctgttcatcaagccacaca 15596185  T
Q  122 gccacacacgagtacgttgttccaaggtctattcc 156  Q
    || ||||| || |||||||||||||||||||||||    
T  15596186 gcaacacaagaatacgttgttccaaggtctattcc 15596220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 125 - 199
Target Start/End: Complemental strand, 34465220 - 34465148
Alignment:
Q  125 acacacgagtacgttgttccaaggtctattcccacggcatgtccttcacatttgttcgccatgcgatctttcaaa 199  Q
    ||||| ||||| ||||| ||||||||||||||||| ||| ||||||||||||| ||||||||  |||||||||||    
T  34465220 acacatgagtaggttgtgccaaggtctattcccacagcacgtccttcacattttttcgccat--gatctttcaaa 34465148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 159
Target Start/End: Original strand, 43745863 - 43745985
Alignment:
Q  34 atcagtgaaagcaacaaaagaaggtgtgattttgctgccttcatcgttgtggataatttcaactctgtttttctcctccagccaaacagccacacacgag 133  Q
    |||||| |||||||||||||||| |||   |||| |||||| ||| ||||| ||||| |||||||| ||||  || ||  |||| ||||| ||||||||     
T  43745863 atcagtaaaagcaacaaaagaagttgt---tttgttgccttgatcattgtgaataatctcaactctattttgttcatcttgccacacagcaacacacgaa 43745959  T
Q  134 tacgttgttccaaggtctattcccac 159  Q
    ||||||||||||||||||||||||||    
T  43745960 tacgttgttccaaggtctattcccac 43745985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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