View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12188_low_3 (Length: 449)

Name: NF12188_low_3
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12188_low_3
NF12188_low_3
[»] chr3 (10 HSPs)
chr3 (18-292)||(52602634-52602912)
chr3 (61-279)||(52623679-52623897)
chr3 (230-376)||(52623897-52624043)
chr3 (367-430)||(52616572-52616635)
chr3 (368-430)||(52624144-52624206)
chr3 (18-69)||(52623385-52623436)
chr3 (211-251)||(14078089-14078129)
chr3 (211-251)||(40799242-40799282)
chr3 (211-251)||(47406196-47406236)
chr3 (211-251)||(52283134-52283174)
[»] chr7 (5 HSPs)
chr7 (211-268)||(19414012-19414069)
chr7 (211-251)||(28623136-28623176)
chr7 (211-251)||(9710580-9710620)
chr7 (211-251)||(16557365-16557405)
chr7 (211-251)||(16608257-16608297)
[»] chr6 (4 HSPs)
chr6 (213-268)||(27167426-27167481)
chr6 (211-251)||(17380922-17380962)
chr6 (211-251)||(19833741-19833781)
chr6 (211-251)||(21234504-21234544)
[»] scaffold0300 (1 HSPs)
scaffold0300 (210-268)||(11415-11473)
[»] scaffold0273 (1 HSPs)
scaffold0273 (211-251)||(22363-22403)
[»] scaffold0032 (1 HSPs)
scaffold0032 (210-268)||(78704-78762)
[»] chr5 (1 HSPs)
chr5 (207-249)||(24163029-24163071)
[»] chr1 (2 HSPs)
chr1 (211-249)||(20908543-20908581)
chr1 (220-265)||(19474953-19474998)
[»] scaffold0578 (1 HSPs)
scaffold0578 (220-265)||(5807-5852)
[»] scaffold0205 (1 HSPs)
scaffold0205 (211-251)||(665-705)
[»] scaffold0064 (1 HSPs)
scaffold0064 (211-251)||(44587-44627)
[»] chr8 (2 HSPs)
chr8 (211-251)||(30422174-30422214)
chr8 (211-251)||(45539209-45539249)
[»] chr4 (2 HSPs)
chr4 (211-251)||(13576847-13576887)
chr4 (211-251)||(37436264-37436304)
[»] chr2 (1 HSPs)
chr2 (211-251)||(24843545-24843585)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 52602634 - 52602912
Alignment:
Q  18 tggagattgaatataaaaatggttacggaagtataatttctcaaattaataatg----gacaacctgatgaaattatatctacgaggaatttggtaatta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| ||||||||||||||||||||    
T  52602634 tggagattgaatataaaaatggttacggaagtataatttctcaaattaataatgaatggacaacctgatgaaattatatgtacgaggaatttggtaatta 52602733  T
Q  114 agtgcatatttatatttgtggtaggattgttagaatcatgatttatgatgaactatcatcattttggcgtagggactgtacaactcttatttataagagg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||| || || |||||||||| |||||||    
T  52602734 agtgcatatttatatttgtggtaggattgttagaatcatgatttatgatgaactatcatcattttgatgtggggattggactactcttatttgtaagagg 52602833  T
Q  214 aaccaatataaattactttgtgtctttcttctctctctaattctttatcttttattcatgtcttttgtattgctgctgc 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  52602834 aaccaatataaattactttgtgtctttcttctctctctaattctttatcttttatttacgtcttttgtattgctgctgc 52602912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 61 - 279
Target Start/End: Original strand, 52623679 - 52623897
Alignment:
Q  61 aattaataatggacaacctgatgaaattatatctacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatg 160  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623679 aattaataatggacaacctgatgaaattatatgcacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatg 52623778  T
Q  161 atgaactatcatcattttggcgtagggactgtacaactcttatttataagaggaaccaatataaattactttgtgtctttcttctctctctaattcttta 260  Q
    |||||||||||||||||||  || |||| || || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623779 atgaactatcatcattttgaagtggggaatgaactactcttatttgtaagaggaaccaatataaattactttgtgtctttcttctctctctaattcttta 52623878  T
Q  261 tcttttattcatgtctttt 279  Q
    ||||||||| | |||||||    
T  52623879 tcttttatttacgtctttt 52623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 230 - 376
Target Start/End: Original strand, 52623897 - 52624043
Alignment:
Q  230 tttgtgtctttcttctctctctaattctttatcttttattcatgtcttttgtattgctgctgcattcaaactgcaacatcagattttgtctagattgatc 329  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52623897 tttgtgtctttcttctttctctaattctttatcttttatttacgtcttttgtattgctgatgcattcaaactgcaacatcagattttgtctagattgatc 52623996  T
Q  330 ttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  52623997 ttaacactttgaaaaagaaatcgaagaaaaactcaaacaatttatag 52624043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 52616572 - 52616635
Alignment:
Q  367 caatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactgga 430  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52616572 caatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactgga 52616635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 368 - 430
Target Start/End: Original strand, 52624144 - 52624206
Alignment:
Q  368 aatttataggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactgga 430  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52624144 aatttaaaggattaaaattgtaaacaggaaagatggcaaacttccaaagaaatggacactgga 52624206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 52623385 - 52623436
Alignment:
Q  18 tggagattgaatataaaaatggttacggaagtataatttctcaaattaataa 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52623385 tggagattgaatataaaaatggttacggaagtataatttctcaaattaataa 52623436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 14078089 - 14078129
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  14078089 aggaaccactataaattgctttgtgtctttcttctctctct 14078129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 40799282 - 40799242
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  40799282 aggaacctgtataaattgctttgtgtctttcttctctctct 40799242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 47406196 - 47406236
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  47406196 aggaacctgtataaattgctttgtgtctttcttctctctct 47406236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 52283174 - 52283134
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  52283174 aggaacctgtataaattgctttgtgtctttcttctctctct 52283134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 19414069 - 19414012
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctctaattctttatcttttat 268  Q
    |||||||| ||||||||  |||||||||||||||||||||| | ||||||||||||||    
T  19414069 aggaaccagtataaattgttttgtgtctttcttctctctctgactctttatcttttat 19414012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 28623136 - 28623176
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  28623136 aggaacctatataaattgctttgtgtctttcttctctctct 28623176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 9710580 - 9710620
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  9710580 aggaacctgtataaattgctttgtgtctttcttctctctct 9710620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 16557365 - 16557405
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  16557365 aggaacctgtataaattgctttgtgtctttcttctctctct 16557405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 16608297 - 16608257
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  16608297 aggaacctgtataaattgctttgtgtctttcttctctctct 16608257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 27167426 - 27167481
Alignment:
Q  213 gaaccaatataaattactttgtgtctttcttctctctctaattctttatcttttat 268  Q
    ||||||||||||||| |||||||||| |||||||||||| | |||||||| |||||    
T  27167426 gaaccaatataaattgctttgtgtctgtcttctctctctgactctttatcgtttat 27167481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 17380962 - 17380922
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  17380962 aggaacctgtataaattgctttgtgtctttcttctctctct 17380922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 19833741 - 19833781
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  19833741 aggaacctttataaattgctttgtgtctttcttctctctct 19833781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 21234544 - 21234504
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  21234544 aggaacctgtataaattgctttgtgtctttcttctctctct 21234504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 11473 - 11415
Alignment:
Q  210 gaggaaccaatataaattactttgtgtctttcttctctctctaattctttatcttttat 268  Q
    ||||||||| ||||||||  || ||||||||||||||||||| | ||||||||||||||    
T  11473 gaggaaccattataaattgtttagtgtctttcttctctctctgactctttatcttttat 11415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 22403 - 22363
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  22403 aggaaccactataaattactttgtgtctttcttctttctct 22363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 268
Target Start/End: Complemental strand, 78762 - 78704
Alignment:
Q  210 gaggaaccaatataaattactttgtgtctttcttctctctctaattctttatcttttat 268  Q
    ||||||| | |||||||| ||||| |||||| ||||||| |||| ||||||||||||||    
T  78762 gaggaactattataaattgctttgcgtctttgttctctccctaactctttatcttttat 78704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 24163071 - 24163029
Alignment:
Q  207 taagaggaaccaatataaattactttgtgtctttcttctctct 249  Q
    ||||||||||||||| |||||  ||||||||||||||||||||    
T  24163071 taagaggaaccaatacaaattgttttgtgtctttcttctctct 24163029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 20908581 - 20908543
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctct 249  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  20908581 aggaaccaatataaattgctttgtgtctgtcttctctct 20908543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 19474953 - 19474998
Alignment:
Q  220 tataaattactttgtgtctttcttctctctctaattctttatcttt 265  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||    
T  19474953 tataaattgatttgtgtctttcttctctctctgactctttatcttt 19474998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 5807 - 5852
Alignment:
Q  220 tataaattactttgtgtctttcttctctctctaattctttatcttt 265  Q
    ||||||||  |||||||||||||||||||||| | |||||||||||    
T  5807 tataaattgatttgtgtctttcttctctctctgactctttatcttt 5852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 665 - 705
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  665 aggaacctgtataaattgctttgtgtctttcttctctctct 705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 44587 - 44627
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  44587 aggaacctgtataaattgctttgtgtctttcttctctctct 44627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 30422174 - 30422214
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  30422174 aggaacctgtataaattgctttgtgtctttcttctctctct 30422214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 45539209 - 45539249
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  45539209 aggaacctgtataaattgctttgtgtctttcttctctctct 45539249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 13576847 - 13576887
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  13576847 aggaacctgtataaattgctttgtgtctttcttctctctct 13576887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 37436264 - 37436304
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  37436264 aggaacctgtataaattgctttgtgtctttcttctctctct 37436304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 24843585 - 24843545
Alignment:
Q  211 aggaaccaatataaattactttgtgtctttcttctctctct 251  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  24843585 aggaaccactataaatttctttgtgtccttcttctctctct 24843545  T

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