View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12188_low_4 (Length: 431)
Name: NF12188_low_4
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 37 - 412
Target Start/End: Original strand, 17490372 - 17490748
Alignment:
| Q |
37 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
136 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17490372 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17490471 |
T |
|
| Q |
137 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17490472 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17490571 |
T |
|
| Q |
237 |
tgctttccaacgtgattcccagtttctattttttcccaaataaattgtgtatagatccaaaacaaacaaacaaattcaaattcaaaggc-tttgtatcaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17490572 |
tgctttccaacgtgattcccagtttctattttttcccaaataaattgtgtgtagatccaaaacaaacaaacaaattcaaattcaaaggcttttgtatcaa |
17490671 |
T |
|
| Q |
336 |
gaaattatttaccagatttgaaattggatcggaaatggctttcttttatggggttgcttgccatgaacggtatatga |
412 |
Q |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17490672 |
gaaattatttacaagatttgaaattgtatcggaaatggctttcttttatggggttgcttgccatgaacggtatatga |
17490748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 37 - 412
Target Start/End: Complemental strand, 17562842 - 17562466
Alignment:
| Q |
37 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
136 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17562842 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17562743 |
T |
|
| Q |
137 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17562742 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17562643 |
T |
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| Q |
237 |
tgctttccaacgtgattcccagtttctattttttcccaaataaattgtgtatagatccaaaacaaacaaacaaattcaaattcaaaggc-tttgtatcaa |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
17562642 |
tgctttccaacgtgattcccagtttctattttttcccaaataaattgtgtgtagatccaaaacaaacaaacaaattcaaattcaaaggcttttgtatcaa |
17562543 |
T |
|
| Q |
336 |
gaaattatttaccagatttgaaattggatcggaaatggctttcttttatggggttgcttgccatgaacggtatatga |
412 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17562542 |
gaaattatttacaagatttgaaattgtatcggaaatggctttcttttatggggttgcttgccatgaacggtatatga |
17562466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 195
Target Start/End: Original strand, 39323255 - 39323287
Alignment:
| Q |
163 |
aaattctagatctagatgaatttgaaaaaattg |
195 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
39323255 |
aaattctagatctagatgaatttgacaaaattg |
39323287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 53651564 - 53651166
Alignment:
| Q |
19 |
catatgactctccata-cttatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcat |
117 |
Q |
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|||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
53651564 |
catatgactctccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatatgagaaaatcat |
53651465 |
T |
|
| Q |
118 |
tccattgagattattaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaactta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| | |
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| T |
53651464 |
tccattgagattattaaccctagctgtaagtattttatgaaattgtaattctagatctagatgaattttacaaaattgtttaatatgacaattaaactca |
53651365 |
T |
|
| Q |
218 |
aaaatgaaattccttcctatgctttccaacgtgattcccagtttctattttttcccaaataaattgtg----tatagatccaaaacaaacaaacaaattc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
53651364 |
aaaatgaaattccttcctatgctttccaacgtgattcccagtttctattttttcccaaataaattgtgtttatatagatccaaaacaaacaaacaaattc |
53651265 |
T |
|
| Q |
314 |
aaattcaaaggctttgtatcaagaaattatttaccagatttgaaattggatcggaaatggctttcttttatggggttgcttgccatgaacggtatatga |
412 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53651264 |
aaattcaaaggctttgcatcaagaaattatttccaagccttgaaattggatcagaaatggctttcttttatggggttgcttgccatgaacggtatatga |
53651166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 33960171 - 33960137
Alignment:
| Q |
163 |
aaattctagatctagatgaatttgaaaaaattgtt |
197 |
Q |
| |
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||||||||||||||||||||||||| ||||||||| |
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| T |
33960171 |
aaattctagatctagatgaatttgacaaaattgtt |
33960137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 24163308 - 24163403
Alignment:
| Q |
244 |
caacgtgattcccagtttctattttttcccaaataaattgtgt----atagatccaaaacaaacaaacaaattcaaattcaaaggctttgtatcaa |
335 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||||||||| | | ||||||||||||||| ||||| |
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|
| T |
24163308 |
caacgtgattcccaatttccatttttttccaaggaaattgtgtttatatagatccaaaacaaacaaacataattgaattcaaaggctttgcatcaa |
24163403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 55201560 - 55201655
Alignment:
| Q |
244 |
caacgtgattcccagtttctattttttcccaaataaattgtgt----atagatccaaaacaaacaaacaaattcaaattcaaaggctttgtatcaa |
335 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||||||||| | | ||||||||||||||| ||||| |
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| T |
55201560 |
caacgtgattcccaatttccatttttttccaaggaaattgtgtttatatagatccaaaacaaacaaacataattgaattcaaaggctttgcatcaa |
55201655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 24162749 - 24162654
Alignment:
| Q |
244 |
caacgtgattcccagtttctattttttcccaaataaattgtgt----atagatccaaaacaaacaaacaaattcaaattcaaaggctttgtatcaa |
335 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||| ||||||||| |||||||||||||||||||||| | | |||||||| |||||| ||||| |
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| T |
24162749 |
caacgtgattcccaatttccatttttttccaaggaaattgtgtttatatagatccaaaacaaacaaacataattgaattcaaatgctttgcatcaa |
24162654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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