View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12188_low_8 (Length: 418)
Name: NF12188_low_8
Description: NF12188
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12188_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 13858213 - 13858524
Alignment:
| Q |
15 |
gtgctgaaaggggtgaacaaagagaagctgaagatgcaagttgaagatcgtagcttattggat-aaactgggagaggctgaaggagacttatgatcaaag |
113 |
Q |
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| T |
13858213 |
gtgctgaaaggggtgaacaaagagaagatgaagatgcaagttgaagatggtagcttattggattaaactgggagaggctgaaggagactgaggatcaaag |
13858312 |
T |
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| Q |
114 |
tggaccacaccgagatggtcaacgatgactttgtcgcgcagttttggctgccggaggatggaaacgccgagcagattcggaatagtttcaagaatatgtg |
213 |
Q |
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| T |
13858313 |
tggaccacaccgagatggtcaacgatgactttgtcgcgcagttttggctgccggaggatggaaacaccgagcagattcggaatagtttcaaaaatatgtg |
13858412 |
T |
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| Q |
214 |
tgttgaggtggtcaaaacctactccaggaaggtataaatgcaacatagatgtttcatattactcctaccataacaaggtgagtattggtatatgtatctg |
313 |
Q |
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| T |
13858413 |
tgttgaggtggtcaaaacctacttcaggaaggtataaatgcaacatagatgcttcatattactcctaccataacaaggtgagtatcggtatatgtatctg |
13858512 |
T |
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| Q |
314 |
cgattaaacttg |
325 |
Q |
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| T |
13858513 |
cgatgaaacttg |
13858524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 13895651 - 13895834
Alignment:
| Q |
15 |
gtgctgaaaggggtgaacaaagagaagctgaagatgcaagttgaagatcgtagcttattggataaactgggagaggctgaaggagacttatgatcaaagt |
114 |
Q |
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| T |
13895651 |
gtgctgaaaggggtgaacaaagagaagctgaagatgcaagttgaagatggtagcttattggataagctgggagaggctgaaggagaatgatgatcaaaat |
13895750 |
T |
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| Q |
115 |
--------ggaccacaccgagatggtcaacgatgactttgtcgcgcagttttggctgccggaggatggaaacgccgagcagatt |
190 |
Q |
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| T |
13895751 |
tacaagcggcactgcgttgagagggtctacagtgactttgtcgcgcagttttggctgccggaggatggaaacaccgagcagatt |
13895834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 13877395 - 13877479
Alignment:
| Q |
15 |
gtgctgaaaggggtgaacaaagagaagctgaagatgcaagttgaagatcgtagcttattggataaactgggagaggctgaaggaga |
100 |
Q |
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| T |
13877395 |
gtgctgagaggggtgaacaaagagaagctgaagatgcaagttaaagatggtagcttatt-gataagctgggagaggctgaaggaga |
13877479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 335 - 397
Target Start/End: Original strand, 13858561 - 13858623
Alignment:
| Q |
335 |
gatgtgtcttggggaggttgggaaaacatttagactctatcatattatactttgggtgtatga |
397 |
Q |
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| T |
13858561 |
gatgtgtcttgtggaggttgagaaagcatttagactctatcatattatactttgggtgtatga |
13858623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 178
Target Start/End: Original strand, 13864938 - 13865056
Alignment:
| Q |
68 |
cttattggataaactgggagaggctgaaggagacttatgatcaaagt--------ggaccacaccgagatggtcaacgatgactttgtcgcgcagttttg |
159 |
Q |
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| T |
13864938 |
cttattggataagctgggagaggctgaaggagaatgatgatcaaaattacaagcggcactgcatcgagatggtctacaattactttgttgcgcagttttg |
13865037 |
T |
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| Q |
160 |
gctgccggaggatggaaac |
178 |
Q |
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| T |
13865038 |
gcagtcggaggatggaaac |
13865056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 190
Target Start/End: Original strand, 13877511 - 13877577
Alignment:
| Q |
124 |
cgagatggtcaacgatgactttgtcgcgcagttttggctgccggaggatggaaacgccgagcagatt |
190 |
Q |
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| T |
13877511 |
cgagatggtctacagtgactttgtggtgcactttttgctgccggaggatggaaacaccaagcagatt |
13877577 |
T |
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