View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_high_4 (Length: 336)
Name: NF12189_high_4
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 54650768 - 54650926
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
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| T |
54650768 |
tgatgagattctaaagcaagacaatgtgatgaaactctctgagcttaaagaattgagagattcgtataaagagcttcacgatttggtgaaattacgtctt |
54650867 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcaggatccagtgataggaat |
173 |
Q |
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| T |
54650868 |
agtgatatcgagatatcagtatgcatgatgcttttagctcaggatccagtggtaggaat |
54650926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 318
Target Start/End: Original strand, 54650963 - 54651071
Alignment:
| Q |
210 |
ttaattctttacagcaactaattttaatttatgttctacttttttggtgatagattatatctgcatgtctctctgaaaccttgtttggcatgtcccacac |
309 |
Q |
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| T |
54650963 |
ttaattctttacaacaactaattttaatttatgttctacttttttggtgatagattatatctgcatgtctctctgaaaccttgtttggcatgtcccacac |
54651062 |
T |
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| Q |
310 |
cgttaaaac |
318 |
Q |
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| T |
54651063 |
cgttaaaac |
54651071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 23310212 - 23310063
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
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| T |
23310212 |
tgatgagattccgaagcaaaacaacgtgacaaaactcctcgagcttaaagaattgagagattcatataaagagcttcaagattgcataaaattgcgtctt |
23310113 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcaggatccagt |
164 |
Q |
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| T |
23310112 |
agtgatatcgagatatcagaatgtttgatgcttctagctcaagatccagt |
23310063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 17979140 - 17979283
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
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|||||||||||||||| || | |||||| |||||||| ||||||||||||||||||||||| || ||||||||| | |||| ||| |||||||||||| |
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| T |
17979140 |
tgatgagattctgaaggaaaatgatgtgacaaaactctctgagcttaaagaattgagagattcatacaaagagcttcaagattgggtcaaattacgtctt |
17979239 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcagga |
158 |
Q |
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| T |
17979240 |
agtgatattgaaatatcagaatatatgatgcttcttgctcagga |
17979283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 23296038 - 23295895
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
| |
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||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||| || ||||| ||| | |||| | ||||| |||||| |
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| T |
23296038 |
tgatgagattctgaagcaaaatgatgtggcaaaactctctgagcttaaagaattgagagattcgtacaaagatcttcaagattgcataaaattgcgtctt |
23295939 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcagga |
158 |
Q |
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| T |
23295938 |
agtgatattgagatatcagaatgtatgatgcttctagctcagga |
23295895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 165
Target Start/End: Complemental strand, 27791644 - 27791494
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
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|||||||||| | |||||| | |||||| |||||||| ||||||||||||||||||| ||| |||||||||||| | |||| || ||||| || || |
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| T |
27791644 |
tgatgagatttttaagcaaaatgatgtgacaaaactctctgagcttaaagaattgagaggttcatataaagagcttcaagattgcgtaaaattgcggctc |
27791545 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcaggatccagtg |
165 |
Q |
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| T |
27791544 |
aatgatatcgagatatctgaatgtttgatgcttctagctcaagatccagtg |
27791494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 34106028 - 34106178
Alignment:
| Q |
15 |
tgatgagattctgaagcaagacaatgtgatgaaactctccgagcttaaagaattgagagattcttataaagagctttacgatttggtgaaattacgtctt |
114 |
Q |
| |
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|||||| ||| |||| ||| || |||||| || |||||| | |||||||||||||||||||| || |||||| | | |||| | | ||||| |||||| |
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| T |
34106028 |
tgatgaaattatgaaccaaaacgatgtgacaaagctctccaatcttaaagaattgagagattcatacaaagagttgcaagattggataaaattgcgtctt |
34106127 |
T |
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| Q |
115 |
agtgatatcgagatatcagaatgcatgatgcttttagctcaggatccagtg |
165 |
Q |
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||||||||||||||||||| || ||||||||| | ||||||||||||||| |
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| T |
34106128 |
agtgatatcgagatatcaggatatatgatgcttcttgctcaggatccagtg |
34106178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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