View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_high_7 (Length: 278)
Name: NF12189_high_7
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 8176147 - 8175884
Alignment:
| Q |
19 |
attaagaaattcgaaccaattacgtagcatatataatttataatacagtgatat----tactgatataaatattctactatactaagaaaacttgatcaa |
114 |
Q |
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| T |
8176147 |
attaagaaattcgaatcaattacgtaccatatataatttataatacagtgatatatattactgatataaatattctactatactaagaaaacttgatcaa |
8176048 |
T |
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| Q |
115 |
aaacaagcaaaaataaatactttaacatttaaaatacagcaacaatggggttggtatgtatattctacatgaatattgagcccattgcacttgttcactc |
214 |
Q |
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| T |
8176047 |
aaacaagcaaaaataaatactttaacatttaaaatacagtaacaatggggttggtatgtatattctacatgaatattgagcccattgcacttgttcactc |
8175948 |
T |
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| Q |
215 |
gcttcacaatatatcacgttaaatgaaaatgaaaatttgatgacttccatacatgttatttttt |
278 |
Q |
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| T |
8175947 |
gcttcacaatatatcacgttaaatgaaaatgaaaatttcatgacttccatacatgttatttttt |
8175884 |
T |
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