View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_high_9 (Length: 245)
Name: NF12189_high_9
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 43283399 - 43283611
Alignment:
| Q |
18 |
ttggactctaaaaccattaaaactttgatcagcaaaacactagatgaaagttatnnnnnnnnctaatataattcaatcccttcttgtatttttctcatct |
117 |
Q |
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| T |
43283399 |
ttggactctgaaaccattaaaactttgatcagcaaaacacttgatgaaagttataaaaaaaactaatatagttcaaccccttcttgtatttttctcacct |
43283498 |
T |
|
| Q |
118 |
tcaaaattttatttaactaaaactaatatgtaccgctaactccattctccaagataatgaatattgagagtaacttatcctccactgagagcatcttctt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43283499 |
tcaaaattttatttaactaaaactaatatgtaccgctaactccattctccaagataatgagtattgagagtaacttatcctccactgagagcatcttctt |
43283598 |
T |
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| Q |
218 |
ccttaatgataat |
230 |
Q |
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| T |
43283599 |
ccttaatgataat |
43283611 |
T |
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