View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12189_low_13 (Length: 233)
Name: NF12189_low_13
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_low_13 |
 | |
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| [»] chr6 (3 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0555 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 14844463 - 14844242
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14844463 |
acctgtacaagtaataaactgaataaagtggtcactaagatcatggggatcagctccggacacgccaatccacgcacggatatgctgccaaactgcgcca |
14844364 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14844363 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
14844264 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14844263 |
gattggctttagttggaagcct |
14844242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 22532331 - 22532537
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| || |
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|
| T |
22532331 |
acctgtacaagtaataaactgaataaaatggtcactaagatcatggggatcagcttcggacacgccaatccacgcacggatatgctgccaaactgcgtca |
22532430 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22532431 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaatactgcatccagacacacacccagctgcctcgactatcagacaccgacgcctcacaa |
22532530 |
T |
|
| Q |
212 |
gattggc |
218 |
Q |
| |
|
||||||| |
|
|
| T |
22532531 |
gattggc |
22532537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 2364919 - 2364995
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcac |
88 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| |
|
|
| T |
2364919 |
acctgtacaagtaataaactgaataaagtggtcactaagatcatggggatcagctccggacacgccaatccatgcac |
2364995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 3545427 - 3545206
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
3545427 |
acctgtacaagtaataaactgaataaagtggtcactaagatcatggggatcagctccggacacgccaatccacgcacggatatgctgccaaattgcgcca |
3545328 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3545327 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
3545228 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3545227 |
gattggctttagttggaagcct |
3545206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 49458544 - 49458759
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||| ||||||| |||||||| | |||||| ||||||| || ||| | || ||||| |||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
49458544 |
acctgtacaattaataaattgaataaaatagtcactgagatcatgtgggtcaacacctgacacgccaatccacgcacgaatatgctgccaaactgcacca |
49458643 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||| ||| ||||| ||||| ||| | |
|
|
| T |
49458644 |
aaagtagtataatgaagaaacaagtgatttgcggtttcttcaataccgca---agccacgcacctagctgcctcgacctccaaacacccacgccgcacga |
49458740 |
T |
|
| Q |
212 |
gattggctttagttggaag |
230 |
Q |
| |
|
||| ||| ||||||||||| |
|
|
| T |
49458741 |
gataggccttagttggaag |
49458759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 1248900 - 1248738
Alignment:
| Q |
24 |
aataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgccaaaagtagcacaa |
123 |
Q |
| |
|
||||||||||||||| | ||||||| ||||| |||||| | || ||||| |||||||| || || ||||||||||| | ||||||||||| |||||| |
|
|
| T |
1248900 |
aataaactgaataaaattctcactaatatcatgaggatcaacacctgacacgccaatccatgcccgaatatgctgccacaacgcgccaaaagtggcacaa |
1248801 |
T |
|
| Q |
124 |
tgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcg |
186 |
Q |
| |
|
|| | |||||||||||||| | ||| |||| || || ||||| ||||||||| |||||||| |
|
|
| T |
1248800 |
tggataaacaagtgatttgctgattcatcaatgccacacccagccacacacccaactgcctcg |
1248738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 476027 - 476248
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||||||| |
|
|
| T |
476027 |
acctgtacaagtaataaactgaataaagtggtcactaagatcatggggatcagctccggacacgctaatccacgcacgaatatgctgccaaactgcgcca |
476126 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
476127 |
aaagtagcacaatgaaggaacaagtgatttgcggtttatgcaataccgcatccagccacacatcccgctgcctcgactgccagacaccgacgcctcacaa |
476226 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
476227 |
gattggctttagttggaagcct |
476248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 31674744 - 31674965
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31674744 |
acctgtgcaattaataaactgaataaaatggtcactaagatcatgagggtcagctccagacacaccaatccacgcacggatatgctgccaaactgcgcca |
31674843 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
31674844 |
aaagtagtacaatgaagaaacaagtgatttgcggtttctgcaataccgcatccatctgcacacccagctgcttcgacatccagacacccacgccgcacaa |
31674943 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
31674944 |
gattgaccttagttggaagcct |
31674965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 31921676 - 31921455
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31921676 |
acctgtgcaattaataaactgaataaaatggtcactaagatcatgagggtcagctccagacacgccaatccacgcacggatatgctgccaaactgcgcca |
31921577 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||| ||||| ||||| |
|
|
| T |
31921576 |
aaagtagtacaatgaagaaacaagtgatttgcggtttctgcaataccgcatccatctgcacacccagctgcttcgacatccagacacccacgccgcacaa |
31921477 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
31921476 |
gattgaccttagttggaagcct |
31921455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 7482 - 7703
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||| |||||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7482 |
acctgtacaattaataaactgaataaaatggtcactaagatcatgagggtcagctccagacacgccaatccacgcacggatatgctgccaaactgcgcca |
7581 |
T |
|
| Q |
112 |
aaagtagcacaatgaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaa |
211 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||| ||||||||| ||||||||| ||||| |||||||||| || ||||| ||| ||||| ||||| |
|
|
| T |
7582 |
aaagtagtacaatgaagaaacaagtgatttgcagtttatgcaataccacatccagctgcacactcagctgcctctacatccagaaacccacgccgcacaa |
7681 |
T |
|
| Q |
212 |
gattggctttagttggaagcct |
233 |
Q |
| |
|
||||| | |||||||||||||| |
|
|
| T |
7682 |
gattgaccttagttggaagcct |
7703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 3939042 - 3939250
Alignment:
| Q |
25 |
ataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgccaaaagtagcacaat |
124 |
Q |
| |
|
|||||||||||||| || |||| |||||||| |||||| | || |||| |||||||| || | |||||||||||||||| |||||||||||||||||| |
|
|
| T |
3939042 |
ataaactgaataaaatgctcacaaagatcatgaggatcaacacctaacacgccaatccatgcccagatatgctgccaaactacgccaaaagtagcacaat |
3939141 |
T |
|
| Q |
125 |
gaaggaacaagtgatttgcggtttctgcaataccgcatccagctacacacccagctgcctcgactgccagacaccgacgcctcacaagattggctttagt |
224 |
Q |
| |
|
| || ||||||||||||| | |||| |||||||||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||||||||||| |
|
|
| T |
3939142 |
ggagaaacaagtgatttgttgattcttcaataccgcatccagccgcgcacccagctgcctcgacttccagacacccacgcctcatgagattggctttagt |
3939241 |
T |
|
| Q |
225 |
tggaagcct |
233 |
Q |
| |
|
||||||||| |
|
|
| T |
3939242 |
tggaagcct |
3939250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 6985059 - 6984957
Alignment:
| Q |
12 |
acctgtgcaagtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacgcacggatatgctgccaaactgcgcca |
111 |
Q |
| |
|
|||||| ||| |||||| ||||||||| |||||||| ||||||| || ||||| | ||||| |||||||| ||||| ||||||||||||||||| ||| |
|
|
| T |
6985059 |
acctgtacaattaataacctgaataaaatggtcactgagatcatgagggtcagcacttgacacgccaatccaagcacgaatatgctgccaaactgcacca |
6984960 |
T |
|
| Q |
112 |
aaa |
114 |
Q |
| |
|
||| |
|
|
| T |
6984959 |
aaa |
6984957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 17689821 - 17689885
Alignment:
| Q |
21 |
agtaataaactgaataaagtggtcactaagatcatagggatcagctccggacactccaatccacg |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||| |
|
|
| T |
17689821 |
agtaataaactgaataaagtggtcactaagatcatgggaatcagcttcggacacgccaatccacg |
17689885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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