View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_low_2 (Length: 746)
Name: NF12189_low_2
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 264 - 742
Target Start/End: Complemental strand, 8956761 - 8956282
Alignment:
| Q |
264 |
tatttatataacttgttaacttggacagctgtgtgtcgtgtcggtgtcgttaacgtatgaatgggttggtgccgttgtgttgtttacgttacttagttgt |
363 |
Q |
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| T |
8956761 |
tatttatataacgtgttaacgtggacagctgtgtg--gtgtcggtgttgttaacgtataaatgg-ttggtaccgttgtgttgtttacgttacttagttgt |
8956665 |
T |
|
| Q |
364 |
gtgcg--cttttttcggtttggtcaattaagatcaatgctatttttgtaatcttctagtaaatatgttttgatttgatttttccaaaaacaatcaatttt |
461 |
Q |
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| T |
8956664 |
gtgtgtgcttttttcggtttggtcaattaagatcaatgctatttttgtaatcttctagtaaatatgttttgattttatttttccaaaaacaatcaatttt |
8956565 |
T |
|
| Q |
462 |
tacacctcatatttcactacattctcttttcttattacatgaagaacttaannnnnnnnncaataaattgtttccatttatggtatc-tttaacatatat |
560 |
Q |
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| T |
8956564 |
tacacctcatatttcactacattctcttttcttattacatgaaaaacttaa--tttttttcaataaattgtttccatttatgatatcttttaacatatat |
8956467 |
T |
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| Q |
561 |
tctaagagcat---acgagtcacatgttaacatgacctttaatataaaagtggaaactatgtaaaattgcagtaaatatgggatttggatttcctaacgt |
657 |
Q |
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| T |
8956466 |
actaagaacatataatgaaacacgtgttagcatgacctttaatataaaagtggaaagtgtctaaaattgcactaaatatgagattcagattttcaaacgt |
8956367 |
T |
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| Q |
658 |
tgaagcggggaggcatggtgcctttagactaatcttattttgtttgatcaatcacatgcagtgaatcatgtcacaggttctgctc |
742 |
Q |
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| T |
8956366 |
tgaaccggggagacatggtgtctttaggctaatcttattatgtttgatgaatcacatgcggtaaatcatgtcacgtgttctgctc |
8956282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 129 - 272
Target Start/End: Complemental strand, 8957089 - 8956945
Alignment:
| Q |
129 |
cttcattgtggtagctgatgatgatgccattctaaatgcaaaattcggcaacagataatgaaaaaagagtgaaaagtgtttattaagaacaagttttt-a |
227 |
Q |
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| T |
8957089 |
cttcattgtggtagctgatgatgatgccattctaaatgcaaaattctgcaacagataatgaaaaaagagtgaaaagtgtttattaagaacaagtttttgt |
8956990 |
T |
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| Q |
228 |
gttaaagagattttggtgatgaaagggaatggggaatatttatat |
272 |
Q |
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| T |
8956989 |
gttaaagatattttggtgatgaaagggaatggggaatatttatat |
8956945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 9112180 - 9112047
Alignment:
| Q |
18 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaag |
117 |
Q |
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| T |
9112180 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgggccgagactacattgacggctaagacgacaacaaaaagg |
9112081 |
T |
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| Q |
118 |
aagaaaagaatcttcattgtggtagctgatgatg |
151 |
Q |
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||| |||| ||||||||||||||||| ||||||| |
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| T |
9112080 |
aaggaaaggatcttcattgtggtagccgatgatg |
9112047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 8965322 - 8965149
Alignment:
| Q |
45 |
tggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcattgtggtagct |
144 |
Q |
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|||||| ||||||||||| ||||| |||||||| |||||||| || || || ||||||| ||||||| |||||| | || ||||||||||||| | |
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| T |
8965322 |
tggtgctggagccaacgacggactaaggtcttgggccgaggccactgtg---gcaaagacgatgacaaaaacgaagaaca--at-ttcattgtggtagtt |
8965229 |
T |
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| Q |
145 |
gatgatgatgccattctaaatgcaaaattcggcaacagataatgaaaaaagagtgaaaagtgtttattaagaacaagttttt |
226 |
Q |
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| T |
8965228 |
gatgatgatgccattgtgattgtaaaattctgcaacagataa--agaaaagagttgaaagtgttaattaagaacaagttttt |
8965149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 8755654 - 8755589
Alignment:
| Q |
18 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccga |
83 |
Q |
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| T |
8755654 |
agatccagcagcaccggcatcaggatctggtgccggagccaacgagggactgaggtcttgagccga |
8755589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 9015486 - 9015428
Alignment:
| Q |
28 |
gctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc |
86 |
Q |
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| T |
9015486 |
gctccggcatcaggacctggtgccggagacaacgaggggctgaggtcttgagccgaggc |
9015428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 8747027 - 8746959
Alignment:
| Q |
18 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc |
86 |
Q |
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| T |
8747027 |
agatccaacagctccaacatcaggacctggtgctggagccaacgagggactgaggtcttgggcagaggc |
8746959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9023523 - 9023455
Alignment:
| Q |
18 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc |
86 |
Q |
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| T |
9023523 |
agatccagcagctccagcatcaggacctggtgccggagccaacgagggactaaggtcttgggcagaggc |
9023455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 8988392 - 8988288
Alignment:
| Q |
44 |
ctggtgccggagccaacgagggactgaggtcttgagccgaggctacattgacggctaagacgacaacaaaaaagaagaaaagaatcttcattgtggtagc |
143 |
Q |
| |
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||||||| |||| |||||||||||| |||||||| ||||||||||| | |||| || |||| ||||||| |||| ||||| ||| ||||||||||| |
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| T |
8988392 |
ctggtgctggagacaacgagggactaaggtcttgggccgaggctac---ggcggcgaatacgatgacaaaaatgaag--aagaa-cttgattgtggtagc |
8988299 |
T |
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| Q |
144 |
tgatgatgatg |
154 |
Q |
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| T |
8988298 |
tgatgatgatg |
8988288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 9034693 - 9034625
Alignment:
| Q |
18 |
agatccaacagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccgaggc |
86 |
Q |
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| T |
9034693 |
agatccagcagctccagcatcaggacctggtgccggagccaacgaaggactaaggtcttgggcagaggc |
9034625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 9108859 - 9108802
Alignment:
| Q |
26 |
cagctccggtatcaggtgctggtgccggagccaacgagggactgaggtcttgagccga |
83 |
Q |
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| T |
9108859 |
cagctccgacatcaggacctgatgctggagccaatgagggactgaggtcttgagccga |
9108802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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