View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_low_5 (Length: 420)
Name: NF12189_low_5
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 19 - 406
Target Start/End: Complemental strand, 6991019 - 6990632
Alignment:
| Q |
19 |
gttttacctatttcttgctagtttttatcctattgttgatccatgcatccatgcatttaatgcgacaaatttaagatgcaatagtacacaaacagttttc |
118 |
Q |
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| T |
6991019 |
gttttacctatttctggctagtttttatcctattgttgatccatgcatccatgcatttaatgcgacaaatttaagatgcaatagtacacaaacagttttc |
6990920 |
T |
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| Q |
119 |
tccctagaactagaacaaatgttagtgatctgctacatgcatgtaatagcactgagaaagaacatgcacacttgcatatatatttttggcattgacttat |
218 |
Q |
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| T |
6990919 |
tccctagaactagaaaaaatgttagtgatctgctacatgcatgtaatagcactgagaaagaacatgcacacttgcatatatatttttggcattgacttat |
6990820 |
T |
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| Q |
219 |
gtgtttaaaactgttacaacagaaatcatcggtgtctgattttattttgtgttaatgaacaggtaaatcatctgtaacatgtgcctatgatgtctactgt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6990819 |
gtgtttaaaactgttacaacagaaatcatcggtgtctgattttattttgtgttaatgaacaggtaaatcatctgtaacatgggcctatgatgtctactgt |
6990720 |
T |
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| Q |
319 |
tttgggaagattttactcgagcttgttaccggtaatattgacagcagcaaatcagatgatgccacgacaaaggattggttagagcaca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6990719 |
tttgggaagattttactcgagcttgttaccggtaatattgacatcagcaaatcagatgatgccacgacaaaggattggttagagcaca |
6990632 |
T |
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