View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12189_low_6 (Length: 382)
Name: NF12189_low_6
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 48814594 - 48814350
Alignment:
| Q |
12 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcactt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48814594 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcactt |
48814495 |
T |
|
| Q |
112 |
catttgagctgagaccagcgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagtaaaacta |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48814494 |
catttgagctgagaccaacgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagtaaaacta |
48814395 |
T |
|
| Q |
212 |
gctagtctgtgcaatttatatgcattggtggtggaaccatgaata |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48814394 |
gctagtctgtgcaatttatatgcattggtggtggaaccatgaata |
48814350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 48788157 - 48787938
Alignment:
| Q |
16 |
acattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcacttcatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48788157 |
acattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcacttcatt |
48788058 |
T |
|
| Q |
116 |
tgagctgagaccagcgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagtaaaactagcta |
215 |
Q |
| |
|
|||||| || ||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
48788057 |
tgagctcaggccaaccaatttctttgagaggaatccagtccttaaaacactttctccaaaagatgttccatggcctggttgctccaattaaaactagaga |
48787958 |
T |
|
| Q |
216 |
gtctgtgcaatttatatgca |
235 |
Q |
| |
|
| |||||||||||| |||| |
|
|
| T |
48787957 |
atgtgtgcaatttatttgca |
48787938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 6 - 208
Target Start/End: Original strand, 48835742 - 48835944
Alignment:
| Q |
6 |
aggagcagagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattga |
105 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
48835742 |
aggaacagagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaggaagatttccccataatgccactattga |
48835841 |
T |
|
| Q |
106 |
gcacttcatttgagctgagaccagcgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagta |
205 |
Q |
| |
|
||||| ||||||| |||| ||| | |||||||||||||| ||||| || ||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
48835842 |
gcactggatttgagttgaggccaactaatttctttgagaggaatcctgttcttaaaatactttctccaagagatgttaaatggcctggttgccccaagta |
48835941 |
T |
|
| Q |
206 |
aaa |
208 |
Q |
| |
|
||| |
|
|
| T |
48835942 |
aaa |
48835944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 48797881 - 48797661
Alignment:
| Q |
12 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcactt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
48797881 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacagaaagatttccccataatgccactattgagcactc |
48797782 |
T |
|
| Q |
112 |
catttgagctgagaccagcgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcct--ggttgctccaagtaaaac |
209 |
Q |
| |
|
||||||| |||| ||| | |||||||||||||| |||| || ||||||| ||||||||||| ||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
48797781 |
gatttgagttgaggccatctaatttctttgagaggaatcatgttcttaaaatactttctccaaaagatgttccatggcctggggttgctccaattaaaac |
48797682 |
T |
|
| Q |
210 |
tagctagtctgtgcaatttat |
230 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
48797681 |
tagctagcctgtgcaatttat |
48797661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 15824173 - 15823973
Alignment:
| Q |
12 |
agagacattgtgaacaaggacattgtgatgtggcatgtagttggaattcatcatgttccagcacaagaagatttcccaataatgccactattgagcactt |
111 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
15824173 |
agagacattgtgaacaaggacatagtaatgtggcatgtagtgggaattcatcatgttccaacacaggaagacttcccaataatgccactattgagcactt |
15824074 |
T |
|
| Q |
112 |
catttgagctgagaccagcgaatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgctccaagtaaaacta |
211 |
Q |
| |
|
|||||||||| || ||| | ||||| |||||||| ||||| ||||||||||| |||||||| ||||||||| ||||| ||||||| |||||| |||||| |
|
|
| T |
15824073 |
catttgagctcaggccaaccaatttttttgagaggaatcctgtccttaaaaccctttctcctggagatgttgtatggcatggttgccccaagtcaaacta |
15823974 |
T |
|
| Q |
212 |
g |
212 |
Q |
| |
|
| |
|
|
| T |
15823973 |
g |
15823973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 48814293 - 48814249
Alignment:
| Q |
321 |
gcaggtttattttgcgagttgatttttgctttactgactaccgtg |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48814293 |
gcaggtttattttgcgagttgatttttgctttactgactaccgtg |
48814249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 197
Target Start/End: Original strand, 48914407 - 48914472
Alignment:
| Q |
132 |
aatttctttgagagaaatccagtccttaaaacactttctccaagagatgttgcatggcctggttgc |
197 |
Q |
| |
|
|||||||||||||| ||||| | ||||||| | ||||||||||||||||| ||||||||||||| |
|
|
| T |
48914407 |
aatttctttgagaggaatcctcttcttaaaatattttctccaagagatgttaaatggcctggttgc |
48914472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University